Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_4677 | DR97_5603 | DR97_4677 | DR97_5603 | Putative EAL domain/GGDEF domain-containing protein; GGDEF: diguanylate cyclase domain protein | annotation not available | 0.761 |
DR97_4677 | fimX | DR97_4677 | DR97_2312 | Putative EAL domain/GGDEF domain-containing protein; GGDEF: diguanylate cyclase domain protein | GGDEF: diguanylate cyclase domain protein | 0.842 |
DR97_4677 | lapD | DR97_4677 | DR97_590 | Putative EAL domain/GGDEF domain-containing protein; GGDEF: diguanylate cyclase domain protein | annotation not available | 0.851 |
DR97_4677 | pilZ | DR97_4677 | DR97_4979 | Putative EAL domain/GGDEF domain-containing protein; GGDEF: diguanylate cyclase domain protein | annotation not available | 0.986 |
DR97_5603 | DR97_4677 | DR97_5603 | DR97_4677 | annotation not available | Putative EAL domain/GGDEF domain-containing protein; GGDEF: diguanylate cyclase domain protein | 0.761 |
DR97_5603 | fimX | DR97_5603 | DR97_2312 | annotation not available | GGDEF: diguanylate cyclase domain protein | 0.829 |
DR97_5603 | lapD | DR97_5603 | DR97_590 | annotation not available | annotation not available | 0.622 |
DR97_5603 | pilZ | DR97_5603 | DR97_4979 | annotation not available | annotation not available | 0.986 |
fimX | DR97_4677 | DR97_2312 | DR97_4677 | GGDEF: diguanylate cyclase domain protein | Putative EAL domain/GGDEF domain-containing protein; GGDEF: diguanylate cyclase domain protein | 0.842 |
fimX | DR97_5603 | DR97_2312 | DR97_5603 | GGDEF: diguanylate cyclase domain protein | annotation not available | 0.829 |
fimX | lapD | DR97_2312 | DR97_590 | GGDEF: diguanylate cyclase domain protein | annotation not available | 0.664 |
fimX | pilS | DR97_2312 | DR97_1850 | GGDEF: diguanylate cyclase domain protein | Two-component system, ntrc family, sensor histidine kinase pils; Member of the two-component regulatory system PilS/PilR involved in the regulation of the expression of type 4 fimbriae. PilS may function as a membrane-associated protein kinase that phosphorylates PilR in response to environmental signals | 0.681 |
fimX | pilU | DR97_2312 | DR97_3364 | GGDEF: diguanylate cyclase domain protein | pilT_fam: twitching motility family protein | 0.512 |
fimX | pilZ | DR97_2312 | DR97_4979 | GGDEF: diguanylate cyclase domain protein | annotation not available | 0.992 |
holB | pilZ | DR97_4978 | DR97_4979 | Dna polymerase iii, delta' subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity (By similarity) | annotation not available | 0.870 |
lapD | DR97_4677 | DR97_590 | DR97_4677 | annotation not available | Putative EAL domain/GGDEF domain-containing protein; GGDEF: diguanylate cyclase domain protein | 0.851 |
lapD | DR97_5603 | DR97_590 | DR97_5603 | annotation not available | annotation not available | 0.622 |
lapD | fimX | DR97_590 | DR97_2312 | annotation not available | GGDEF: diguanylate cyclase domain protein | 0.664 |
lapD | pilZ | DR97_590 | DR97_4979 | annotation not available | annotation not available | 0.988 |
pilN | pilO | DR97_2398 | DR97_2397 | annotation not available | annotation not available | 0.999 |
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