atuG protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

atuG

annotation not available (274 aa)

Predicted Functional Partners:

atuH

0.974

atuB

0.958

atuF

0.815

atuD

0.776

atuE

0.744

atuC

0.600

atuA

0.549

FadB

0.495

DR97_1506

0.441

DR97_401

0.407

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1506	DR97_401	DR97_1506	DR97_401	annotation not available	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	0.629
DR97_1506	FadB	DR97_1506	DR97_149	annotation not available	annotation not available	0.494
DR97_1506	atuB	DR97_1506	DR97_5054	annotation not available	annotation not available	0.498
DR97_1506	atuD	DR97_1506	DR97_5052	annotation not available	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	0.676
DR97_1506	atuG	DR97_1506	DR97_5049	annotation not available	annotation not available	0.441
DR97_401	DR97_1506	DR97_401	DR97_1506	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.629
DR97_401	FadB	DR97_401	DR97_149	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.893
DR97_401	atuB	DR97_401	DR97_5054	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.550
DR97_401	atuC	DR97_401	DR97_5053	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.450
DR97_401	atuE	DR97_401	DR97_5051	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.729
DR97_401	atuG	DR97_401	DR97_5049	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.407
DR97_401	atuH	DR97_401	DR97_5048	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.918
FadB	DR97_1506	DR97_149	DR97_1506	annotation not available	annotation not available	0.494
FadB	DR97_401	DR97_149	DR97_401	annotation not available	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	0.893
FadB	atuA	DR97_149	DR97_5055	annotation not available	Hypothetical protein; Uncharacterized protein	0.577
FadB	atuB	DR97_149	DR97_5054	annotation not available	annotation not available	0.546
FadB	atuC	DR97_149	DR97_5053	annotation not available	annotation not available	0.587
FadB	atuD	DR97_149	DR97_5052	annotation not available	Putative acyl-coa dehydrogenase; acyl-CoA dehydrogenase, N-terminal domain protein	0.721
FadB	atuG	DR97_149	DR97_5049	annotation not available	annotation not available	0.495
FadB	atuH	DR97_149	DR97_5048	annotation not available	annotation not available	0.636

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