atuE protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

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[Homology]

Score

atuE

annotation not available (264 aa)

Predicted Functional Partners:

atuB

0.982

MCCC1

0.981

mccB

0.979

atuA

0.972

acdh-6

0.957

HMGCL

0.930

mdlC

0.875

crt

0.737

hsdl2

0.722

DR97_102

0.682

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_102	HMGCL	DR97_102	DR97_5837	annotation not available	annotation not available	0.754
DR97_102	atuB	DR97_102	DR97_5054	annotation not available	annotation not available	0.528
DR97_102	atuE	DR97_102	DR97_5051	annotation not available	annotation not available	0.682
HMGCL	DR97_102	DR97_5837	DR97_102	annotation not available	annotation not available	0.754
HMGCL	atuE	DR97_5837	DR97_5051	annotation not available	annotation not available	0.930
HMGCL	mccB	DR97_5837	DR97_5053	annotation not available	annotation not available	0.747
MCCC1	acdh-6	DR97_5050	DR97_5052	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.978
MCCC1	atuA	DR97_5050	DR97_5055	annotation not available	Uncharacterized protein	0.634
MCCC1	atuB	DR97_5050	DR97_5054	annotation not available	annotation not available	0.631
MCCC1	atuE	DR97_5050	DR97_5051	annotation not available	annotation not available	0.981
MCCC1	hsdl2	DR97_5050	DR97_5049	annotation not available	annotation not available	0.814
MCCC1	mccB	DR97_5050	DR97_5053	annotation not available	annotation not available	0.976
acdh-6	MCCC1	DR97_5052	DR97_5050	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.978
acdh-6	atuA	DR97_5052	DR97_5055	acyl-CoA dehydrogenase, N-terminal domain protein	Uncharacterized protein	0.842
acdh-6	atuB	DR97_5052	DR97_5054	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.920
acdh-6	atuE	DR97_5052	DR97_5051	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.957
acdh-6	crt	DR97_5052	DR97_5183	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.524
acdh-6	hsdl2	DR97_5052	DR97_5049	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.755
acdh-6	mccB	DR97_5052	DR97_5053	acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.989
atuA	MCCC1	DR97_5055	DR97_5050	Uncharacterized protein	annotation not available	0.634

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