uraD protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

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Coexpression

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[Homology]

Score

uraD

UHCUDC- OHCU decarboxylase (171 aa)

Predicted Functional Partners:

uraH

0.998

DR97_505

0.996

alc

0.980

DR97_509

0.915

allA

0.904

amaB

0.882

guaD3

0.829

guaD1

0.824

xdhB

0.712

xdhA

0.662

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_505	DR97_509	DR97_505	DR97_509	Uncharacterized protein	annotation not available	0.899
DR97_505	alc	DR97_505	DR97_507	Uncharacterized protein	Allantoicase- allantoicase; Belongs to the allantoicase family	0.938
DR97_505	allA	DR97_505	DR97_508	Uncharacterized protein	Ureidoglycolate lyase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source	0.861
DR97_505	amaB	DR97_505	DR97_3411	Uncharacterized protein	Allantoate amidohydrolase; Hydantase- amidase, hydantoinase/carbamoylase family protein	0.475
DR97_505	guaD1	DR97_505	DR97_3091	Uncharacterized protein	Guan_deamin- guanine deaminase	0.788
DR97_505	guaD3	DR97_505	DR97_415	Uncharacterized protein	Guan_deamin- guanine deaminase	0.790
DR97_505	uraD	DR97_505	DR97_506	Uncharacterized protein	UHCUDC- OHCU decarboxylase	0.996
DR97_505	uraH	DR97_505	DR97_504	Uncharacterized protein	Hdxy_isourate- hydroxyisourate hydrolase	0.855
DR97_505	xdhA	DR97_505	DR97_412	Uncharacterized protein	4-hydroxybenzoyl-CoA reductase subunit gamma; xanthine_xdhA- xanthine dehydrogenase, small subunit	0.722
DR97_505	xdhB	DR97_505	DR97_413	Uncharacterized protein	xanthine_xdhB- xanthine dehydrogenase, molybdopterin binding subunit	0.741
DR97_509	DR97_505	DR97_509	DR97_505	annotation not available	Uncharacterized protein	0.899
DR97_509	alc	DR97_509	DR97_507	annotation not available	Allantoicase- allantoicase; Belongs to the allantoicase family	0.793
DR97_509	allA	DR97_509	DR97_508	annotation not available	Ureidoglycolate lyase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source	0.938
DR97_509	guaD1	DR97_509	DR97_3091	annotation not available	Guan_deamin- guanine deaminase	0.705
DR97_509	guaD3	DR97_509	DR97_415	annotation not available	Guan_deamin- guanine deaminase	0.712
DR97_509	uraD	DR97_509	DR97_506	annotation not available	UHCUDC- OHCU decarboxylase	0.915
DR97_509	uraH	DR97_509	DR97_504	annotation not available	Hdxy_isourate- hydroxyisourate hydrolase	0.829
DR97_509	xdhA	DR97_509	DR97_412	annotation not available	4-hydroxybenzoyl-CoA reductase subunit gamma; xanthine_xdhA- xanthine dehydrogenase, small subunit	0.809
DR97_509	xdhB	DR97_509	DR97_413	annotation not available	xanthine_xdhB- xanthine dehydrogenase, molybdopterin binding subunit	0.816
alc	DR97_505	DR97_507	DR97_505	Allantoicase- allantoicase; Belongs to the allantoicase family	Uncharacterized protein	0.938

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