STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uraDUHCUDC: OHCU decarboxylase (171 aa)    
Predicted Functional Partners:
uraH
Hdxy_isourate: hydroxyisourate hydrolase
  
 0.998
DR97_505
Uncharacterized protein
  
 0.996
alc
Allantoicase: allantoicase; Belongs to the allantoicase family
 
  
 0.980
DR97_509
annotation not available
 
    0.915
allA
Ureidoglycolate lyase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
 
    0.904
amaB
Allantoate amidohydrolase; Hydantase: amidase, hydantoinase/carbamoylase family protein
   
 0.882
guaD3
Guan_deamin: guanine deaminase
 
   
 0.829
guaD1
Guan_deamin: guanine deaminase
 
   
 0.824
xdhB
xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit
 
     0.712
xdhA
4-hydroxybenzoyl-CoA reductase subunit gamma; xanthine_xdhA: xanthine dehydrogenase, small subunit
     0.662
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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