DR97_5068 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_5068

annotation not available (668 aa)

Predicted Functional Partners:

DR97_5067

0.990

yeaC

0.960

DR97_5069

0.847

pilZ

0.702

DR97_1214

0.657

DR97_2396

0.629

pilN

0.628

pilM

0.623

DR97_5070

0.618

DR97_2973

0.610

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1214	DR97_2396	DR97_1214	DR97_2396	DUF4845 domain-containing protein	annotation not available	0.498
DR97_1214	DR97_5067	DR97_1214	DR97_5067	DUF4845 domain-containing protein	Uncharacterized protein	0.654
DR97_1214	DR97_5068	DR97_1214	DR97_5068	DUF4845 domain-containing protein	annotation not available	0.657
DR97_1214	pilM	DR97_1214	DR97_2399	DUF4845 domain-containing protein	pilM: type IV pilus assembly PilM family protein	0.431
DR97_1214	pilN	DR97_1214	DR97_2398	DUF4845 domain-containing protein	annotation not available	0.441
DR97_1214	pilZ	DR97_1214	DR97_4979	DUF4845 domain-containing protein	annotation not available	0.461
DR97_2396	DR97_1214	DR97_2396	DR97_1214	annotation not available	DUF4845 domain-containing protein	0.498
DR97_2396	DR97_2973	DR97_2396	DR97_2973	annotation not available	annotation not available	0.882
DR97_2396	DR97_5067	DR97_2396	DR97_5067	annotation not available	Uncharacterized protein	0.657
DR97_2396	DR97_5068	DR97_2396	DR97_5068	annotation not available	annotation not available	0.629
DR97_2396	pilM	DR97_2396	DR97_2399	annotation not available	pilM: type IV pilus assembly PilM family protein	0.991
DR97_2396	pilN	DR97_2396	DR97_2398	annotation not available	annotation not available	0.998
DR97_2396	pilZ	DR97_2396	DR97_4979	annotation not available	annotation not available	0.774
DR97_2973	DR97_2396	DR97_2973	DR97_2396	annotation not available	annotation not available	0.882
DR97_2973	DR97_5067	DR97_2973	DR97_5067	annotation not available	Uncharacterized protein	0.660
DR97_2973	DR97_5068	DR97_2973	DR97_5068	annotation not available	annotation not available	0.610
DR97_2973	pilM	DR97_2973	DR97_2399	annotation not available	pilM: type IV pilus assembly PilM family protein	0.882
DR97_2973	pilN	DR97_2973	DR97_2398	annotation not available	annotation not available	0.905
DR97_2973	pilZ	DR97_2973	DR97_4979	annotation not available	annotation not available	0.776
DR97_5067	DR97_1214	DR97_5067	DR97_1214	Uncharacterized protein	DUF4845 domain-containing protein	0.654

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About