Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1715 | YfbQ | DR97_1715 | DR97_5113 | annotation not available | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | 0.900 |
DR97_1715 | argA | DR97_1715 | DR97_2573 | annotation not available | Amino-acid n-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily | 0.824 |
DR97_1715 | argJ | DR97_1715 | DR97_1580 | annotation not available | Bifunctional ornithine acetyltransferase/n-acetylglutamate synthase protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate | 0.808 |
DR97_1715 | gdhA | DR97_1715 | DR97_1893 | annotation not available | Glu/leu/phe/val dehydrogenase, dimerization domain protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family | 0.907 |
DR97_1715 | gdhB | DR97_1715 | DR97_4868 | annotation not available | Nad-dependent glutamate dehydrogenase; Involved in arginine catabolism by converting L-glutamate, into 2-oxoglutarate, which is then channeled into the tricarboxylic acid cycle. Can also utilize other amino acids of the glutamate family | 0.900 |
DR97_4467 | YfbQ | DR97_4467 | DR97_5113 | Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | 0.856 |
YfbQ | DR97_1715 | DR97_5113 | DR97_1715 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | annotation not available | 0.900 |
YfbQ | DR97_4467 | DR97_5113 | DR97_4467 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family | 0.856 |
YfbQ | alr | DR97_5113 | DR97_2281 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | Biosynthetic alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. Provides the D-alanine required for cell wall biosynthesis | 0.876 |
YfbQ | argA | DR97_5113 | DR97_2573 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | Amino-acid n-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily | 0.907 |
YfbQ | argJ | DR97_5113 | DR97_1580 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | Bifunctional ornithine acetyltransferase/n-acetylglutamate synthase protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate | 0.912 |
YfbQ | dadX | DR97_5113 | DR97_2673 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | Alanine racemase; Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by DadA | 0.877 |
YfbQ | gdhA | DR97_5113 | DR97_1893 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | Glu/leu/phe/val dehydrogenase, dimerization domain protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family | 0.911 |
YfbQ | gdhB | DR97_5113 | DR97_4868 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | Nad-dependent glutamate dehydrogenase; Involved in arginine catabolism by converting L-glutamate, into 2-oxoglutarate, which is then channeled into the tricarboxylic acid cycle. Can also utilize other amino acids of the glutamate family | 0.902 |
YfbQ | ilvD | DR97_5113 | DR97_3319 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family | 0.910 |
YfbQ | leuA | DR97_5113 | DR97_4077 | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate) | 0.906 |
alr | YfbQ | DR97_2281 | DR97_5113 | Biosynthetic alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. Provides the D-alanine required for cell wall biosynthesis | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | 0.876 |
alr | dadX | DR97_2281 | DR97_2673 | Biosynthetic alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. Provides the D-alanine required for cell wall biosynthesis | Alanine racemase; Isomerizes L-alanine to D-alanine which is then oxidized to pyruvate by DadA | 0.820 |
argA | DR97_1715 | DR97_2573 | DR97_1715 | Amino-acid n-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily | annotation not available | 0.824 |
argA | YfbQ | DR97_2573 | DR97_5113 | Amino-acid n-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily | Alanine-synthesizing transaminase; Glutamate-pyruvate aminotransferase AlaA | 0.907 |
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