DR97_5169 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_5169

annotation not available (309 aa)

Predicted Functional Partners:

DR97_5168

0.958

DR97_3759

0.644

yfdC

0.617

DR97_900

0.590

htpG

0.578

DR97_875

0.578

bvgS

0.573

glnK

0.528

fdx1

0.526

gacS

0.522

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3759	DR97_5169	DR97_3759	DR97_5169	annotation not available	annotation not available	0.644
DR97_3759	DR97_875	DR97_3759	DR97_875	annotation not available	annotation not available	0.509
DR97_3759	bvgS	DR97_3759	DR97_3920	annotation not available	annotation not available	0.795
DR97_3759	gacS	DR97_3759	DR97_1011	annotation not available	annotation not available	0.810
DR97_3759	htpG	DR97_3759	DR97_293	annotation not available	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity	0.487
DR97_5168	DR97_5169	DR97_5168	DR97_5169	Uncharacterized protein	annotation not available	0.958
DR97_5168	DR97_900	DR97_5168	DR97_900	Uncharacterized protein	annotation not available	0.448
DR97_5168	yfdC	DR97_5168	DR97_5170	Uncharacterized protein	annotation not available	0.542
DR97_5169	DR97_3759	DR97_5169	DR97_3759	annotation not available	annotation not available	0.644
DR97_5169	DR97_5168	DR97_5169	DR97_5168	annotation not available	Uncharacterized protein	0.958
DR97_5169	DR97_875	DR97_5169	DR97_875	annotation not available	annotation not available	0.578
DR97_5169	DR97_900	DR97_5169	DR97_900	annotation not available	annotation not available	0.590
DR97_5169	bvgS	DR97_5169	DR97_3920	annotation not available	annotation not available	0.573
DR97_5169	fdx1	DR97_5169	DR97_3328	annotation not available	annotation not available	0.526
DR97_5169	gacS	DR97_5169	DR97_1011	annotation not available	annotation not available	0.522
DR97_5169	glnK	DR97_5169	DR97_2659	annotation not available	annotation not available	0.528
DR97_5169	htpG	DR97_5169	DR97_293	annotation not available	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity	0.578
DR97_5169	yfdC	DR97_5169	DR97_5170	annotation not available	annotation not available	0.617
DR97_875	DR97_3759	DR97_875	DR97_3759	annotation not available	annotation not available	0.509
DR97_875	DR97_5169	DR97_875	DR97_5169	annotation not available	annotation not available	0.578

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About