STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OrdLannotation not available (427 aa)    
Predicted Functional Partners:
DR97_3176
4-(gamma-glutamylamino)butanal dehydrogenase; Belongs to the aldehyde dehydrogenase family
 
 
 0.921
DR97_5551
arsC: arsenate reductase
      
 0.852
spuB
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.800
DR97_5807
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.798
spuI
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.797
DR97_2901
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.784
DR97_369
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.774
DR97_3389
annotation not available
  
  
 0.697
rlmN
23S rRNA (adenine2503-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity
  
  
 0.685
DR97_4571
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.685
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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