Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_2360 | DR97_5186 | DR97_2360 | DR97_5186 | annotation not available | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | 0.671 |
DR97_2360 | Mrp | DR97_2360 | DR97_4440 | annotation not available | Atp-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP | 0.413 |
DR97_2618 | DR97_5186 | DR97_2618 | DR97_5186 | annotation not available | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | 0.654 |
DR97_2618 | nifU | DR97_2618 | DR97_4056 | annotation not available | Nitrogen fixation protein nifu and related proteins; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters | 0.450 |
DR97_5185 | DR97_5186 | DR97_5185 | DR97_5186 | annotation not available | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | 0.464 |
DR97_5186 | DR97_2360 | DR97_5186 | DR97_2360 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | annotation not available | 0.671 |
DR97_5186 | DR97_2618 | DR97_5186 | DR97_2618 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | annotation not available | 0.654 |
DR97_5186 | DR97_5185 | DR97_5186 | DR97_5185 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | annotation not available | 0.464 |
DR97_5186 | Mrp | DR97_5186 | DR97_4440 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | Atp-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP | 0.852 |
DR97_5186 | amgR | DR97_5186 | DR97_2569 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | Two-component system, ompr family, phosphate regulon response regulator ompr; Transcriptional regulatory , C terminal family protein | 0.483 |
DR97_5186 | aroA | DR97_5186 | DR97_4772 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | annotation not available | 0.499 |
DR97_5186 | nifU | DR97_5186 | DR97_4056 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | Nitrogen fixation protein nifu and related proteins; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters | 0.633 |
DR97_5186 | rpsA | DR97_5186 | DR97_4774 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | Small subunit ribosomal protein s1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity) | 0.710 |
DR97_5186 | serB | DR97_5186 | DR97_2313 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | serB: phosphoserine phosphatase SerB | 0.525 |
DR97_5186 | tsf | DR97_5186 | DR97_4284 | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | Translation elongation factor ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity) | 0.672 |
Mrp | DR97_2360 | DR97_4440 | DR97_2360 | Atp-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP | annotation not available | 0.413 |
Mrp | DR97_5186 | DR97_4440 | DR97_5186 | Atp-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP | Uncharacterized protein; Dyp_perox_fam: Dyp-type peroxidase family protein | 0.852 |
Mrp | nifU | DR97_4440 | DR97_4056 | Atp-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP | Nitrogen fixation protein nifu and related proteins; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters | 0.569 |
Mrp | rpsA | DR97_4440 | DR97_4774 | Atp-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP | Small subunit ribosomal protein s1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity) | 0.564 |
Mrp | tsf | DR97_4440 | DR97_4284 | Atp-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP | Translation elongation factor ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity) | 0.621 |
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