STRINGSTRING
rhs protein (Pseudomonas aeruginosa) - STRING interaction network
"rhs" - Uncharacterized protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhsUncharacterized protein; Rhs_assc_core- RHS repeat-associated core domain protein (1317 aa)    
Predicted Functional Partners:
DR97_5274
vgr_GE- Rhs element Vgr family protein (689 aa)
   
  0.896
rhsB
annotation not available (430 aa)
     
  0.882
DR97_5276
annotation not available (63 aa)
              0.845
bcpA
Oxaloacetate decarboxylase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily (276 aa)
           
  0.717
srr
annotation not available (320 aa)
   
   
  0.711
rtcB
annotation not available (404 aa)
   
     
  0.563
ybiA
Swarming motility protein YbiA; Ribofla_fusion- conserved hypothetical domain protein (184 aa)
 
          0.561
DR97_2995
Hemagglutinin; adhes_NPXG- filamentous hemagglutinin family N-terminal domain protein (3521 aa)
         
  0.558
vgrG1
VgrG1; vgr_GE- Rhs element Vgr family protein (646 aa)
   
  0.540
inaZ
Type VI secretion protein ImpA; vgr_GE- Rhs element Vgr family protein (741 aa)
     
  0.501
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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