DR97_5299 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_5299

annotation not available (88 aa)

Predicted Functional Partners:

DR97_5300

0.845

DR97_5301

0.765

DR97_5305

0.469

DR97_5304

0.469

DR97_5303

0.469

DR97_5302

0.469

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DR97_5299	DR97_5300	annotation not available	Uncharacterized protein	0.845
DR97_5299	DR97_5301	annotation not available	annotation not available	0.765
DR97_5299	DR97_5302	annotation not available	annotation not available	0.469
DR97_5299	DR97_5303	annotation not available	annotation not available	0.469
DR97_5299	DR97_5304	annotation not available	Uncharacterized protein; Transcriptional regulatory , C terminal family protein	0.469
DR97_5299	DR97_5305	annotation not available	annotation not available	0.469
DR97_5300	DR97_5299	Uncharacterized protein	annotation not available	0.845
DR97_5300	DR97_5301	Uncharacterized protein	annotation not available	0.772
DR97_5300	DR97_5302	Uncharacterized protein	annotation not available	0.469
DR97_5300	DR97_5303	Uncharacterized protein	annotation not available	0.469
DR97_5300	DR97_5304	Uncharacterized protein	Uncharacterized protein; Transcriptional regulatory , C terminal family protein	0.469
DR97_5300	DR97_5305	Uncharacterized protein	annotation not available	0.469
DR97_5301	DR97_5299	annotation not available	annotation not available	0.765
DR97_5301	DR97_5300	annotation not available	Uncharacterized protein	0.772
DR97_5301	DR97_5302	annotation not available	annotation not available	0.523
DR97_5301	DR97_5303	annotation not available	annotation not available	0.564
DR97_5301	DR97_5304	annotation not available	Uncharacterized protein; Transcriptional regulatory , C terminal family protein	0.529
DR97_5301	DR97_5305	annotation not available	annotation not available	0.565
DR97_5302	DR97_5299	annotation not available	annotation not available	0.469
DR97_5302	DR97_5300	annotation not available	Uncharacterized protein	0.469

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About