DR97_5353 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_5353

annotation not available (327 aa)

Predicted Functional Partners:

dsrH

0.900

tusD

0.891

tusC

0.891

tusE

0.891

trpF

0.817

aroA

0.775

trpC

0.757

trpA

0.708

phzB

0.698

DR97_3697

0.698

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3697	DR97_5353	DR97_3697	DR97_5353	annotation not available	annotation not available	0.698
DR97_3697	aroA	DR97_3697	DR97_4772	annotation not available	3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	0.845
DR97_3697	phzB	DR97_3697	DR97_5944	annotation not available	annotation not available	0.983
DR97_3697	trpA	DR97_3697	DR97_2989	annotation not available	Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate; Belongs to the TrpA family	0.975
DR97_3697	trpC	DR97_3697	DR97_3604	annotation not available	annotation not available	0.955
DR97_3697	trpF	DR97_3697	DR97_4820	annotation not available	annotation not available	0.961
DR97_5353	DR97_3697	DR97_5353	DR97_3697	annotation not available	annotation not available	0.698
DR97_5353	aroA	DR97_5353	DR97_4772	annotation not available	3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	0.775
DR97_5353	dsrH	DR97_5353	DR97_5355	annotation not available	sulf_tusB_dsrH- sulfur relay protein TusB/DsrH	0.900
DR97_5353	phzB	DR97_5353	DR97_5944	annotation not available	annotation not available	0.698
DR97_5353	trpA	DR97_5353	DR97_2989	annotation not available	Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate; Belongs to the TrpA family	0.708
DR97_5353	trpC	DR97_5353	DR97_3604	annotation not available	annotation not available	0.757
DR97_5353	trpF	DR97_5353	DR97_4820	annotation not available	annotation not available	0.817
DR97_5353	tusC	DR97_5353	DR97_5356	annotation not available	sulf_tusC_dsrF- sulfur relay protein TusC/DsrF; Belongs to the DsrF/TusC family	0.891
DR97_5353	tusD	DR97_5353	DR97_5357	annotation not available	annotation not available	0.891
DR97_5353	tusE	DR97_5353	DR97_5354	annotation not available	Sulfurtransferase; Part of a sulfur-relay system	0.891
aroA	DR97_3697	DR97_4772	DR97_3697	3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	annotation not available	0.845
aroA	DR97_5353	DR97_4772	DR97_5353	3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	annotation not available	0.775
aroA	phzB	DR97_4772	DR97_5944	3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	annotation not available	0.845
aroA	trpA	DR97_4772	DR97_2989	3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate	Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate; Belongs to the TrpA family	0.856

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About