STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_539annotation not available (138 aa)    
Predicted Functional Partners:
ccmD
Putative heme exporter protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
 
     0.812
ccmI
Cytochrome c-type biogenesis protein ccmh; Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase (By similarity)
 
     0.807
ccmH
Cytochrome c-type biogenesis protein ccmh; Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase (By similarity)
       0.795
dsbE
Cytochrome c biogenesis protein ccmg, thiol:disulfide interchange protein dsbe; Involved in disulfide bond formation. Catalyzes a late, reductive step in the assembly of periplasmic c-type cytochromes, probably the reduction of disulfide bonds of the apocytochrome c to allow covalent linkage with the heme. Possible subunit of a heme lyase (By similarity)
       0.791
DR97_25
Hypothetical protein; Uncharacterized protein
  
     0.770
DR97_3018
annotation not available
  
     0.770
DR97_4674
annotation not available
  
     0.770
DR97_3246
Hypothetical protein; DUF2292 domain-containing protein
  
     0.769
ccmF
Cytochrome c-type biogenesis protein ccmf; Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase (By similarity)
       0.766
ccmC
Heme exporter ccmc family protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
       0.766
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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