Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1375 | DR97_5392 | DR97_1375 | DR97_5392 | annotation not available | dnaB: replicative DNA helicase | 0.885 |
DR97_1375 | polA | DR97_1375 | DR97_2871 | annotation not available | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.812 |
DR97_1375 | priA | DR97_1375 | DR97_2405 | annotation not available | Primosomal protein n' (replication factor y) (superfamily ii helicase); Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA | 0.951 |
DR97_1375 | recQ | DR97_1375 | DR97_4583 | annotation not available | recQ: ATP-dependent DNA helicase RecQ | 0.900 |
DR97_5390 | DR97_5391 | DR97_5390 | DR97_5391 | Conserved hypothetical protein | annotation not available | 0.845 |
DR97_5390 | DR97_5392 | DR97_5390 | DR97_5392 | Conserved hypothetical protein | dnaB: replicative DNA helicase | 0.845 |
DR97_5390 | DR97_5393 | DR97_5390 | DR97_5393 | Conserved hypothetical protein | annotation not available | 0.845 |
DR97_5391 | DR97_5390 | DR97_5391 | DR97_5390 | annotation not available | Conserved hypothetical protein | 0.845 |
DR97_5391 | DR97_5392 | DR97_5391 | DR97_5392 | annotation not available | dnaB: replicative DNA helicase | 0.858 |
DR97_5391 | DR97_5393 | DR97_5391 | DR97_5393 | annotation not available | annotation not available | 0.888 |
DR97_5392 | DR97_1375 | DR97_5392 | DR97_1375 | dnaB: replicative DNA helicase | annotation not available | 0.885 |
DR97_5392 | DR97_5390 | DR97_5392 | DR97_5390 | dnaB: replicative DNA helicase | Conserved hypothetical protein | 0.845 |
DR97_5392 | DR97_5391 | DR97_5392 | DR97_5391 | dnaB: replicative DNA helicase | annotation not available | 0.858 |
DR97_5392 | DR97_5393 | DR97_5392 | DR97_5393 | dnaB: replicative DNA helicase | annotation not available | 0.867 |
DR97_5392 | dnaA | DR97_5392 | DR97_2950 | dnaB: replicative DNA helicase | Chromosomal replication initiator protein dnaa; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity) | 0.984 |
DR97_5392 | dnaE | DR97_5392 | DR97_4299 | dnaB: replicative DNA helicase | Dna polymerase iii, alpha subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity) | 0.811 |
DR97_5392 | dnaG | DR97_5392 | DR97_3546 | dnaB: replicative DNA helicase | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | 0.998 |
DR97_5392 | polA | DR97_5392 | DR97_2871 | dnaB: replicative DNA helicase | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.910 |
DR97_5392 | priA | DR97_5392 | DR97_2405 | dnaB: replicative DNA helicase | Primosomal protein n' (replication factor y) (superfamily ii helicase); Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA | 0.953 |
DR97_5392 | recQ | DR97_5392 | DR97_4583 | dnaB: replicative DNA helicase | recQ: ATP-dependent DNA helicase RecQ | 0.891 |
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