pltC protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

pltC

annotation not available (1739 aa)

Predicted Functional Partners:

pltF

0.992

pltG

0.990

pltD

0.972

pltA

0.960

pltE

0.949

DR97_713

0.894

pchF

0.856

pltR

0.853

rifR

0.845

pltB

0.840

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_713	pltB	DR97_713	DR97_5439	annotation not available	Polyketide synthase module-like protein; Thiolase, N-terminal domain protein	0.722
DR97_713	pltC	DR97_713	DR97_5440	annotation not available	annotation not available	0.894
DR97_713	pltG	DR97_713	DR97_5444	annotation not available	annotation not available	0.742
DR97_713	rifR	DR97_713	DR97_3682	annotation not available	annotation not available	0.753
pchF	pltB	DR97_3686	DR97_5439	Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein	Polyketide synthase module-like protein; Thiolase, N-terminal domain protein	0.822
pchF	pltC	DR97_3686	DR97_5440	Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.856
pchF	pltD	DR97_3686	DR97_5441	Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.474
pchF	pltG	DR97_3686	DR97_5444	Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.870
pchF	rifR	DR97_3686	DR97_3682	Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein	annotation not available	0.990
pltA	pltB	DR97_5438	DR97_5439	annotation not available	Polyketide synthase module-like protein; Thiolase, N-terminal domain protein	0.974
pltA	pltC	DR97_5438	DR97_5440	annotation not available	annotation not available	0.960
pltA	pltD	DR97_5438	DR97_5441	annotation not available	annotation not available	0.964
pltA	pltE	DR97_5438	DR97_5442	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.933
pltA	pltF	DR97_5438	DR97_5443	annotation not available	Putative acyl-CoA synthetase; AA-adenyl-dom- amino acid adenylation domain protein; Belongs to the ATP-dependent AMP-binding enzyme family	0.939
pltA	pltG	DR97_5438	DR97_5444	annotation not available	annotation not available	0.933
pltA	pltR	DR97_5438	DR97_5436	annotation not available	annotation not available	0.769
pltB	DR97_713	DR97_5439	DR97_713	Polyketide synthase module-like protein; Thiolase, N-terminal domain protein	annotation not available	0.722
pltB	pchF	DR97_5439	DR97_3686	Polyketide synthase module-like protein; Thiolase, N-terminal domain protein	Pyochelin synthetase; AA-adenyl-dom- amino acid adenylation domain protein	0.822
pltB	pltA	DR97_5439	DR97_5438	Polyketide synthase module-like protein; Thiolase, N-terminal domain protein	annotation not available	0.974
pltB	pltC	DR97_5439	DR97_5440	Polyketide synthase module-like protein; Thiolase, N-terminal domain protein	annotation not available	0.840

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