STRINGSTRING
copD protein (Pseudomonas aeruginosa) - STRING interaction network
"copD" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copDannotation not available (308 aa)    
Predicted Functional Partners:
copC
annotation not available (128 aa)
 
   
  0.993
copB2
annotation not available (326 aa)
 
          0.716
pcoA
copper_res_A- copper-resistance , CopA family protein (639 aa)
 
     
  0.647
silP
ATPase-IB1_Cu- copper-translocating P-type ATPase (674 aa)
 
     
  0.647
copB
annotation not available (351 aa)
 
          0.609
yieF
annotation not available (185 aa)
           
  0.552
parR
Transcriptional regulatory , C terminal family protein (235 aa)
           
  0.550
copK
annotation not available (94 aa)
              0.544
copA
annotation not available (614 aa)
 
     
  0.537
DR97_5466
RND_mfp- efflux transporter, RND family, MFP subunit (505 aa)
 
     
  0.491
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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