Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_2181 | DR97_5510 | DR97_2181 | DR97_5510 | annotation not available | soxR: redox-sensitive transcriptional activator SoxR | 0.843 |
DR97_2181 | marR | DR97_2181 | DR97_2524 | annotation not available | annotation not available | 0.858 |
DR97_5267 | DR97_5510 | DR97_5267 | DR97_5510 | Putative HTH-type transcriptional regulator; Rrf2_super: Rrf2 family protein | soxR: redox-sensitive transcriptional activator SoxR | 0.854 |
DR97_5267 | NorR | DR97_5267 | DR97_5295 | Putative HTH-type transcriptional regulator; Rrf2_super: Rrf2 family protein | annotation not available | 0.876 |
DR97_5267 | hmp | DR97_5267 | DR97_5296 | Putative HTH-type transcriptional regulator; Rrf2_super: Rrf2 family protein | Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress | 0.942 |
DR97_5267 | iscR | DR97_5267 | DR97_4054 | Putative HTH-type transcriptional regulator; Rrf2_super: Rrf2 family protein | Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins | 0.850 |
DR97_5510 | DR97_2181 | DR97_5510 | DR97_2181 | soxR: redox-sensitive transcriptional activator SoxR | annotation not available | 0.843 |
DR97_5510 | DR97_5267 | DR97_5510 | DR97_5267 | soxR: redox-sensitive transcriptional activator SoxR | Putative HTH-type transcriptional regulator; Rrf2_super: Rrf2 family protein | 0.854 |
DR97_5510 | NorR | DR97_5510 | DR97_5295 | soxR: redox-sensitive transcriptional activator SoxR | annotation not available | 0.865 |
DR97_5510 | ahpC | DR97_5510 | DR97_3096 | soxR: redox-sensitive transcriptional activator SoxR | Alkyl hydroperoxide reductase subunit c; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides | 0.697 |
DR97_5510 | hmp | DR97_5510 | DR97_5296 | soxR: redox-sensitive transcriptional activator SoxR | Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress | 0.637 |
DR97_5510 | iscR | DR97_5510 | DR97_4054 | soxR: redox-sensitive transcriptional activator SoxR | Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins | 0.775 |
DR97_5510 | katE | DR97_5510 | DR97_6280 | soxR: redox-sensitive transcriptional activator SoxR | Hydroperoxidase ii; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide | 0.717 |
DR97_5510 | marR | DR97_5510 | DR97_2524 | soxR: redox-sensitive transcriptional activator SoxR | annotation not available | 0.873 |
DR97_5510 | rpoS | DR97_5510 | DR97_4317 | soxR: redox-sensitive transcriptional activator SoxR | Rna polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response | 0.738 |
DR97_5510 | sodA | DR97_5510 | DR97_1647 | soxR: redox-sensitive transcriptional activator SoxR | Superoxide dismutase, fe-mn family; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems | 0.874 |
NorR | DR97_5267 | DR97_5295 | DR97_5267 | annotation not available | Putative HTH-type transcriptional regulator; Rrf2_super: Rrf2 family protein | 0.876 |
NorR | DR97_5510 | DR97_5295 | DR97_5510 | annotation not available | soxR: redox-sensitive transcriptional activator SoxR | 0.865 |
NorR | hmp | DR97_5295 | DR97_5296 | annotation not available | Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress | 0.966 |
NorR | iscR | DR97_5295 | DR97_4054 | annotation not available | Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins | 0.591 |
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