STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_5545annotation not available (241 aa)    
Predicted Functional Partners:
DR97_5542
Uncharacterized protein; conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class
 
  
 0.974
traG
Uncharacterized protein
 
    0.968
DR97_5544
annotation not available
 
    0.968
DR97_5543
Integrating conjugative element , PFL_4695 family domain protein; ICE_PFL_4695: integrating conjugative element , PFL_4695 family domain protein
 
     0.966
DR97_5547
annotation not available
    0.966
DR97_5546
annotation not available
 
    0.955
DR97_1275
DUF3438 domain-containing protein
 
    0.849
DR97_5578
annotation not available
  
 
 0.845
DR97_1741
annotation not available
  
 
 0.844
DR97_1316
annotation not available
  
 
 0.842
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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