Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_491 | DR97_5568 | DR97_491 | DR97_5568 | Putative signal peptidase; Belongs to the peptidase S26 family | annotation not available | 0.894 |
DR97_491 | ftsY | DR97_491 | DR97_3340 | Putative signal peptidase; Belongs to the peptidase S26 family | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components | 0.585 |
DR97_491 | lepB | DR97_491 | DR97_1215 | Putative signal peptidase; Belongs to the peptidase S26 family | Signal peptidase i; Belongs to the peptidase S26 family | 0.820 |
DR97_491 | yidC | DR97_491 | DR97_2947 | Putative signal peptidase; Belongs to the peptidase S26 family | Putative inner membrane protein translocase component; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins | 0.635 |
DR97_5568 | DR97_491 | DR97_5568 | DR97_491 | annotation not available | Putative signal peptidase; Belongs to the peptidase S26 family | 0.894 |
DR97_5568 | DR97_5569 | DR97_5568 | DR97_5569 | annotation not available | ATPase-IB1_Cu: copper-translocating P-type ATPase | 0.850 |
DR97_5568 | DR97_5570 | DR97_5568 | DR97_5570 | annotation not available | cadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator | 0.683 |
DR97_5568 | ftsY | DR97_5568 | DR97_3340 | annotation not available | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components | 0.652 |
DR97_5568 | lepB | DR97_5568 | DR97_1215 | annotation not available | Signal peptidase i; Belongs to the peptidase S26 family | 0.912 |
DR97_5568 | lgt | DR97_5568 | DR97_3307 | annotation not available | Phosphatidylglycerol---prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins | 0.916 |
DR97_5568 | lnt | DR97_5568 | DR97_3881 | annotation not available | Apolipoprotein n-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation | 0.912 |
DR97_5568 | lolA | DR97_5568 | DR97_5348 | annotation not available | Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) | 0.899 |
DR97_5568 | lolB | DR97_5568 | DR97_1977 | annotation not available | Outer membrane lipoprotein lolb; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein | 0.878 |
DR97_5568 | yidC | DR97_5568 | DR97_2947 | annotation not available | Putative inner membrane protein translocase component; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins | 0.737 |
DR97_5569 | DR97_5568 | DR97_5569 | DR97_5568 | ATPase-IB1_Cu: copper-translocating P-type ATPase | annotation not available | 0.850 |
DR97_5569 | DR97_5570 | DR97_5569 | DR97_5570 | ATPase-IB1_Cu: copper-translocating P-type ATPase | cadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator | 0.901 |
DR97_5570 | DR97_5568 | DR97_5570 | DR97_5568 | cadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator | annotation not available | 0.683 |
DR97_5570 | DR97_5569 | DR97_5570 | DR97_5569 | cadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator | ATPase-IB1_Cu: copper-translocating P-type ATPase | 0.901 |
ftsY | DR97_491 | DR97_3340 | DR97_491 | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components | Putative signal peptidase; Belongs to the peptidase S26 family | 0.585 |
ftsY | DR97_5568 | DR97_3340 | DR97_5568 | Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components | annotation not available | 0.652 |
page 1 of 3