STRINGSTRING
inrR protein (Pseudomonas aeruginosa) - STRING interaction network
"inrR" - Uncharacterized protein ORF C103 in Pseudomonas aeruginosa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
inrRUncharacterized protein ORF C103 (175 aa)    
Predicted Functional Partners:
DR97_5575
Uncharacterized protein (263 aa)
 
          0.967
DR97_5513
Relaxase; ICE_TraI_Pfluor- integrating conjugative element relaxase, PFGI-1 class (604 aa)
    
     
  0.943
DR97_1840
Relaxase; ICE_TraI_Pfluor- integrating conjugative element relaxase, PFGI-1 class (639 aa)
    
     
  0.921
ssb2
annotation not available (146 aa)
 
          0.918
topB2
topB- DNA topoisomerase III family protein (676 aa)
 
     
  0.893
DR97_1261
Uncharacterized protein; ICE_TraI_Pfluor- integrating conjugative element relaxase, PFGI-1 class (616 aa)
    
     
  0.890
ssb
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism (165 aa)
         
  0.857
attL
annotation not available (387 aa)
            
  0.853
DR97_1308
topB- DNA topoisomerase III family protein (671 aa)
 
     
  0.819
DR97_5579
Conserved hypothetical protein (89 aa)
 
          0.795
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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