DR97_5615 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_5615

annotation not available (555 aa)

Predicted Functional Partners:

prpC

0.955

pta

0.954

glcB

0.940

alh-9

0.930

DR97_5617

0.929

mmsA3

0.926

iolA2

0.926

mmsA1

0.926

yfmT

0.925

aldA1

0.925

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_5615	DR97_5617	DR97_5615	DR97_5617	annotation not available	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	0.929
DR97_5615	aldA1	DR97_5615	DR97_3845	annotation not available	annotation not available	0.925
DR97_5615	alh-9	DR97_5615	DR97_917	annotation not available	annotation not available	0.930
DR97_5615	glcB	DR97_5615	DR97_3450	annotation not available	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily	0.940
DR97_5615	iolA2	DR97_5615	DR97_3087	annotation not available	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.926
DR97_5615	mmsA1	DR97_5615	DR97_4369	annotation not available	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.926
DR97_5615	mmsA3	DR97_5615	DR97_1237	annotation not available	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.926
DR97_5615	prpC	DR97_5615	DR97_1187	annotation not available	cit_synth_II: 2-methylcitrate synthase/citrate synthase II family protein; Belongs to the citrate synthase family	0.955
DR97_5615	pta	DR97_5615	DR97_1109	annotation not available	Phosphate acetyltransferase; Involved in acetate metabolism; In the N-terminal section; belongs to the CobB/CobQ family	0.954
DR97_5615	yfmT	DR97_5615	DR97_2250	annotation not available	annotation not available	0.925
DR97_5617	DR97_5615	DR97_5617	DR97_5615	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	annotation not available	0.929
DR97_5617	glcB	DR97_5617	DR97_3450	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily	0.919
DR97_5617	iolA2	DR97_5617	DR97_3087	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.688
DR97_5617	mmsA1	DR97_5617	DR97_4369	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.688
DR97_5617	mmsA3	DR97_5617	DR97_1237	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.688
DR97_5617	pta	DR97_5617	DR97_1109	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	Phosphate acetyltransferase; Involved in acetate metabolism; In the N-terminal section; belongs to the CobB/CobQ family	0.922
aldA1	DR97_5615	DR97_3845	DR97_5615	annotation not available	annotation not available	0.925
aldA1	pta	DR97_3845	DR97_1109	annotation not available	Phosphate acetyltransferase; Involved in acetate metabolism; In the N-terminal section; belongs to the CobB/CobQ family	0.569
alh-9	DR97_5615	DR97_917	DR97_5615	annotation not available	annotation not available	0.930
alh-9	iolA2	DR97_917	DR97_3087	annotation not available	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.920

page 1 of 5

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2020

Credits

Access

Info

About