STRINGSTRING
ynbC protein (Pseudomonas aeruginosa) - STRING interaction network
"ynbC" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynbCannotation not available (586 aa)    
Predicted Functional Partners:
DR97_5632
annotation not available (449 aa)
   
  0.995
DR97_5630
annotation not available (211 aa)
        0.991
DR97_5633
Uncharacterized protein (150 aa)
 
        0.983
DR97_5634
annotation not available (209 aa)
 
      0.974
cdsA_3
annotation not available (311 aa)
 
        0.972
ppx
Exopolyphosphatase; Degradation of inorganic polyphosphates (polyP). Releases orthophosphate processively from the ends of the polyP chain (501 aa)
           
  0.712
rifR
annotation not available (251 aa)
           
  0.552
DR97_4610
Putative outer membrane lipoprotein (242 aa)
   
        0.521
iscA
Putative iron-binding protein; iscA- iron-sulfur cluster assembly protein IscA (107 aa)
   
 
  0.511
creD
annotation not available (452 aa)
   
          0.492
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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