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opmB protein (Pseudomonas aeruginosa) - STRING interaction network
"opmB" - Uncharacterized protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opmBUncharacterized protein; outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein (492 aa)    
Predicted Functional Partners:
mdtA
Multidrug resistance protein MdtA; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (426 aa)
 
 
  0.980
mdtC
annotation not available (1036 aa)
 
  0.979
mdtB3
annotation not available (1043 aa)
 
  0.949
mexB
annotation not available (1046 aa)
 
  0.753
DR97_588
Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (385 aa)
 
 
  0.746
mexA
annotation not available (383 aa)
 
 
  0.736
mexE
Resistance-nodulation-cell division (RND) Multidrug efflux membrane fusion protein MexE; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (414 aa)
 
 
  0.735
DR97_5466
RND_mfp- efflux transporter, RND family, MFP subunit (505 aa)
   
 
  0.714
bepE
2A0602- RND transporter, hydrophobe/amphiphile efflux-1 family protein (1062 aa)
 
  0.706
acrD
2A0602- RND transporter, hydrophobe/amphiphile efflux-1 family protein (1045 aa)
 
  0.704
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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