STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
antCannotation not available (340 aa)    
Predicted Functional Partners:
antB
Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) small subunit; anthran_1_2_B: anthranilate 1,2-dioxygenase, small subunit
 
 
 0.998
antA
Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) large subunit; anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
 
 
 0.998
catC
Muco_delta: muconolactone delta-isomerase
 
  
 0.982
xylL
annotation not available
  
 0.939
catB
Muconate cycloisomerase i; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
  
 0.908
pcaH
Protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit
     
 0.883
pcaG
Protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit
     
 0.882
algP
Alginate regulatory protein; The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e. under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, have been implicated in this activation process
  
 
 0.864
nuoI
Nadh-quinone oxidoreductase, chain i family protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
  
 
 0.864
DR97_768
annotation not available
  
  
 0.858
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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