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STRINGSTRING
mchF protein (Pseudomonas aeruginosa) - STRING interaction network
"mchF" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mchFannotation not available (343 aa)    
Predicted Functional Partners:
ompK
annotation not available (331 aa)
 
   
  0.953
aprE
Alkaline protease secretion protein AprE; type_I_hlyD- type I secretion membrane fusion , HlyD family protein (432 aa)
 
   
  0.687
DR97_5970
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (395 aa)
 
   
  0.687
prtE
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (443 aa)
 
   
  0.687
opmL
annotation not available (425 aa)
   
   
  0.611
dsdA
Probable D-serine dehydratase; D_Ser_am_lyase- D-serine ammonia-lyase; Belongs to the serine/threonine dehydratase family. DsdA subfamily (448 aa)
           
  0.463
tolC_1
type_I_sec_TolC- type I secretion outer membrane , TolC family protein (482 aa)
   
   
  0.459
rbsB
annotation not available (319 aa)
           
  0.434
aprA
annotation not available (479 aa)
   
   
  0.428
DR97_2486
annotation not available (272 aa)
 
     
  0.409
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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