DR97_5818 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_5818

annotation not available (99 aa)

Predicted Functional Partners:

grp

0.793

yfbS

0.569

DR97_5820

0.538

DR97_1583

0.507

DR97_3458

0.504

ivy

0.497

DR97_356

0.466

DR97_1948

0.454

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1583	DR97_1948	DR97_1583	DR97_1948	RNA-binding protein	Putative lipoprotein	0.764
DR97_1583	DR97_3458	DR97_1583	DR97_3458	RNA-binding protein	annotation not available	0.655
DR97_1583	DR97_5818	DR97_1583	DR97_5818	RNA-binding protein	annotation not available	0.507
DR97_1948	DR97_1583	DR97_1948	DR97_1583	Putative lipoprotein	RNA-binding protein	0.764
DR97_1948	DR97_3458	DR97_1948	DR97_3458	Putative lipoprotein	annotation not available	0.688
DR97_1948	DR97_5818	DR97_1948	DR97_5818	Putative lipoprotein	annotation not available	0.454
DR97_3458	DR97_1583	DR97_3458	DR97_1583	annotation not available	RNA-binding protein	0.655
DR97_3458	DR97_1948	DR97_3458	DR97_1948	annotation not available	Putative lipoprotein	0.688
DR97_3458	DR97_5818	DR97_3458	DR97_5818	annotation not available	annotation not available	0.504
DR97_356	DR97_5818	DR97_356	DR97_5818	annotation not available	annotation not available	0.466
DR97_5818	DR97_1583	DR97_5818	DR97_1583	annotation not available	RNA-binding protein	0.507
DR97_5818	DR97_1948	DR97_5818	DR97_1948	annotation not available	Putative lipoprotein	0.454
DR97_5818	DR97_3458	DR97_5818	DR97_3458	annotation not available	annotation not available	0.504
DR97_5818	DR97_356	DR97_5818	DR97_356	annotation not available	annotation not available	0.466
DR97_5818	DR97_5820	DR97_5818	DR97_5820	annotation not available	Uncharacterized protein	0.538
DR97_5818	grp	DR97_5818	DR97_5819	annotation not available	annotation not available	0.793
DR97_5818	ivy	DR97_5818	DR97_3964	annotation not available	annotation not available	0.497
DR97_5818	yfbS	DR97_5818	DR97_4027	annotation not available	annotation not available	0.569
DR97_5820	DR97_5818	DR97_5820	DR97_5818	Uncharacterized protein	annotation not available	0.538
DR97_5820	grp	DR97_5820	DR97_5819	Uncharacterized protein	annotation not available	0.647

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