Mccc1 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Mccc1

annotation not available (655 aa)

Predicted Functional Partners:

gnyB

0.999

liuC

0.999

IVD1

0.993

HMGCL

0.990

gnyR

0.923

oadA

0.855

DR97_3464

0.805

DR97_3463

0.758

pyc

0.740

fadB

0.737

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3463	DR97_3464	DR97_3463	DR97_3464	annotation not available	Hydrolase	0.999
DR97_3463	Mccc1	DR97_3463	DR97_5836	annotation not available	annotation not available	0.758
DR97_3464	DR97_3463	DR97_3464	DR97_3463	Hydrolase	annotation not available	0.999
DR97_3464	Mccc1	DR97_3464	DR97_5836	Hydrolase	annotation not available	0.805
HMGCL	IVD1	DR97_5837	DR97_5833	annotation not available	Isovaleryl-CoA dehydrogenase 1, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	0.969
HMGCL	Mccc1	DR97_5837	DR97_5836	annotation not available	annotation not available	0.990
HMGCL	gnyB	DR97_5837	DR97_5834	annotation not available	annotation not available	0.994
HMGCL	gnyR	DR97_5837	DR97_5832	annotation not available	annotation not available	0.946
HMGCL	liuC	DR97_5837	DR97_5835	annotation not available	annotation not available	0.999
IVD1	HMGCL	DR97_5833	DR97_5837	Isovaleryl-CoA dehydrogenase 1, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.969
IVD1	Mccc1	DR97_5833	DR97_5836	Isovaleryl-CoA dehydrogenase 1, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.993
IVD1	fadB	DR97_5833	DR97_4923	Isovaleryl-CoA dehydrogenase 1, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family	0.945
IVD1	gnyB	DR97_5833	DR97_5834	Isovaleryl-CoA dehydrogenase 1, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.998
IVD1	gnyR	DR97_5833	DR97_5832	Isovaleryl-CoA dehydrogenase 1, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.966
IVD1	liuC	DR97_5833	DR97_5835	Isovaleryl-CoA dehydrogenase 1, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.972
Mccc1	DR97_3463	DR97_5836	DR97_3463	annotation not available	annotation not available	0.758
Mccc1	DR97_3464	DR97_5836	DR97_3464	annotation not available	Hydrolase	0.805
Mccc1	HMGCL	DR97_5836	DR97_5837	annotation not available	annotation not available	0.990
Mccc1	IVD1	DR97_5836	DR97_5833	annotation not available	Isovaleryl-CoA dehydrogenase 1, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein	0.993
Mccc1	fadB	DR97_5836	DR97_4923	annotation not available	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family	0.737

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