Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_5873 | DR97_5874 | DR97_5873 | DR97_5874 | annotation not available | annotation not available | 0.905 |
DR97_5873 | agmR | DR97_5873 | DR97_5870 | annotation not available | Bacterial regulatory s, luxr family protein; Positive activator for glycerol metabolism | 0.754 |
DR97_5873 | ercS' | DR97_5873 | DR97_5872 | annotation not available | annotation not available | 0.980 |
DR97_5873 | exaA | DR97_5873 | DR97_5865 | annotation not available | Alcohol dehydrogenase (cytochrome c); Catalyzes the oxidation of primary alcohols to the corresponding aldehydes, except for methanol, which is a very poor substrate. ExaA is also able to use secondary alcohols as well as amino alcohols like ethanolamine and l-amino-2-propanol, and aldehydes as substrates | 0.789 |
DR97_5873 | exaB | DR97_5873 | DR97_5864 | annotation not available | Cytochrome c family protein; Is an essential component of the ethanol oxidation system that allows P.aeruginosa to grow on ethanol as the sole carbon and energy source. Is the direct electron acceptor of the quinoprotein ethanol dehydrogenase (QEDH) | 0.773 |
DR97_5873 | pqqB | DR97_5873 | DR97_5861 | annotation not available | Pyrroloquinoline quinone biosynthesis protein b; May be involved in the transport of PQQ or its precursor to the periplasm | 0.547 |
DR97_5873 | pqqC | DR97_5873 | DR97_5860 | annotation not available | Pyrroloquinoline quinone biosynthesis protein; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ | 0.535 |
DR97_5873 | pqqD | DR97_5873 | DR97_5859 | annotation not available | Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway | 0.524 |
DR97_5873 | pqqE | DR97_5873 | DR97_5858 | annotation not available | Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ) | 0.525 |
DR97_5874 | DR97_5873 | DR97_5874 | DR97_5873 | annotation not available | annotation not available | 0.905 |
DR97_5874 | agmR | DR97_5874 | DR97_5870 | annotation not available | Bacterial regulatory s, luxr family protein; Positive activator for glycerol metabolism | 0.713 |
DR97_5874 | ercS' | DR97_5874 | DR97_5872 | annotation not available | annotation not available | 0.908 |
DR97_5874 | exaA | DR97_5874 | DR97_5865 | annotation not available | Alcohol dehydrogenase (cytochrome c); Catalyzes the oxidation of primary alcohols to the corresponding aldehydes, except for methanol, which is a very poor substrate. ExaA is also able to use secondary alcohols as well as amino alcohols like ethanolamine and l-amino-2-propanol, and aldehydes as substrates | 0.767 |
DR97_5874 | exaB | DR97_5874 | DR97_5864 | annotation not available | Cytochrome c family protein; Is an essential component of the ethanol oxidation system that allows P.aeruginosa to grow on ethanol as the sole carbon and energy source. Is the direct electron acceptor of the quinoprotein ethanol dehydrogenase (QEDH) | 0.774 |
DR97_5874 | pqqB | DR97_5874 | DR97_5861 | annotation not available | Pyrroloquinoline quinone biosynthesis protein b; May be involved in the transport of PQQ or its precursor to the periplasm | 0.554 |
DR97_5874 | pqqC | DR97_5874 | DR97_5860 | annotation not available | Pyrroloquinoline quinone biosynthesis protein; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ | 0.516 |
DR97_5874 | pqqD | DR97_5874 | DR97_5859 | annotation not available | Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway | 0.552 |
DR97_5874 | pqqE | DR97_5874 | DR97_5858 | annotation not available | Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ) | 0.494 |
agmR | DR97_5873 | DR97_5870 | DR97_5873 | Bacterial regulatory s, luxr family protein; Positive activator for glycerol metabolism | annotation not available | 0.754 |
agmR | DR97_5874 | DR97_5870 | DR97_5874 | Bacterial regulatory s, luxr family protein; Positive activator for glycerol metabolism | annotation not available | 0.713 |
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