mdtB1 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

mdtB1

annotation not available (1036 aa)

Predicted Functional Partners:

DR97_588

0.987

mdtA

0.867

acrA

0.751

DR97_5828

0.750

mexP

0.733

mexE

0.708

mexA

0.708

DR97_589

0.679

opmB

0.666

lapD

0.653

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_5828	mdtB1	DR97_5828	DR97_587	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	annotation not available	0.750
DR97_5828	mexA	DR97_5828	DR97_3393	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	annotation not available	0.828
DR97_5828	opmB	DR97_5828	DR97_5646	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Uncharacterized protein; outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	0.682
DR97_588	DR97_589	DR97_588	DR97_589	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	annotation not available	0.634
DR97_588	lapD	DR97_588	DR97_590	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	annotation not available	0.599
DR97_588	mdtB1	DR97_588	DR97_587	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	annotation not available	0.987
DR97_588	opmB	DR97_588	DR97_5646	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Uncharacterized protein; outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	0.746
DR97_589	DR97_588	DR97_589	DR97_588	annotation not available	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.634
DR97_589	lapD	DR97_589	DR97_590	annotation not available	annotation not available	0.980
DR97_589	mdtB1	DR97_589	DR97_587	annotation not available	annotation not available	0.679
acrA	mdtB1	DR97_1905	DR97_587	Acriflavine resistance protein A; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	annotation not available	0.751
acrA	mexP	DR97_1905	DR97_4419	Acriflavine resistance protein A; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Resistance-nodulation-cell division (RND) efflux membrane fusion protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.436
acrA	opmB	DR97_1905	DR97_5646	Acriflavine resistance protein A; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Uncharacterized protein; outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	0.688
lapD	DR97_588	DR97_590	DR97_588	annotation not available	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.599
lapD	DR97_589	DR97_590	DR97_589	annotation not available	annotation not available	0.980
lapD	mdtB1	DR97_590	DR97_587	annotation not available	annotation not available	0.653
mdtA	mdtB1	DR97_5643	DR97_587	Multidrug resistance protein MdtA; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	annotation not available	0.867
mdtA	opmB	DR97_5643	DR97_5646	Multidrug resistance protein MdtA; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Uncharacterized protein; outer_NodT- efflux transporter, outer membrane factor (OMF) lipo, NodT family protein	0.980
mdtB1	DR97_5828	DR97_587	DR97_5828	annotation not available	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.750
mdtB1	DR97_588	DR97_587	DR97_588	annotation not available	Uncharacterized protein; RND_mfp- efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.987

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