STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_589annotation not available (237 aa)    
Predicted Functional Partners:
lapD
annotation not available
 
 
 0.999
DR97_4677
Putative EAL domain/GGDEF domain-containing protein; GGDEF: diguanylate cyclase domain protein
 
 
 
 0.993
DR97_5603
annotation not available
   
 
 0.993
fimX
GGDEF: diguanylate cyclase domain protein
   
 
 0.992
DR97_5971
Putative atp-binding/permease fusion abc transporter; Uncharacterized protein; type_I_sec_LssB: type I secretion system ATPase family protein
 
   
 0.782
OpmL
annotation not available
 
   
 0.771
DR97_5970
type_I_hlyD: type I secretion membrane fusion , HlyD family protein
 
   
 0.703
DR97_587
Putative rnd efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
  
    0.679
DR97_588
Putative rnd efflux membrane fusion protein precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
  
    0.634
aprA
Alkaline metalloproteinase precursor; Belongs to the peptidase M10B family
   
 
 0.540
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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