Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1193 | rbsR | DR97_1193 | DR97_5899 | annotation not available | annotation not available | 0.859 |
DR97_532 | NagF | DR97_532 | DR97_4116 | Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; Transcriptional regulator; deoR C terminal sensor domain protein | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | 0.549 |
DR97_532 | fruI | DR97_532 | DR97_4380 | Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; Transcriptional regulator; deoR C terminal sensor domain protein | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family | 0.649 |
DR97_532 | rbsR | DR97_532 | DR97_5899 | Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; Transcriptional regulator; deoR C terminal sensor domain protein | annotation not available | 0.737 |
NagF | DR97_532 | DR97_4116 | DR97_532 | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; Transcriptional regulator; deoR C terminal sensor domain protein | 0.549 |
NagF | fruI | DR97_4116 | DR97_4380 | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family | 0.999 |
NagF | rbsA | DR97_4116 | DR97_5901 | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | annotation not available | 0.400 |
NagF | rbsC | DR97_4116 | DR97_5900 | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family | 0.514 |
NagF | rbsK | DR97_4116 | DR97_5898 | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway | 0.670 |
NagF | rbsR | DR97_4116 | DR97_5899 | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | annotation not available | 0.831 |
YbdL | rbsR | DR97_4071 | DR97_5899 | annotation not available | annotation not available | 0.716 |
argR | rbsR | DR97_1050 | DR97_5899 | Arac family transcriptional regulator, l-arginine-responsive activator; ArgR could be a transcriptional activator of the dauBAR operon in response to the presence of L-Arg | annotation not available | 0.722 |
fruI | DR97_532 | DR97_4380 | DR97_532 | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family | Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; Transcriptional regulator; deoR C terminal sensor domain protein | 0.649 |
fruI | NagF | DR97_4380 | DR97_4116 | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | 0.999 |
fruI | rbsK | DR97_4380 | DR97_5898 | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway | 0.560 |
fruI | rbsR | DR97_4380 | DR97_5899 | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family | annotation not available | 0.865 |
rbsA | NagF | DR97_5901 | DR97_4116 | annotation not available | Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase | 0.400 |
rbsA | rbsB | DR97_5901 | DR97_5902 | annotation not available | annotation not available | 0.999 |
rbsA | rbsC | DR97_5901 | DR97_5900 | annotation not available | Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family | 0.999 |
rbsA | rbsK | DR97_5901 | DR97_5898 | annotation not available | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway | 0.875 |
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