STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsRannotation not available (337 aa)    
Predicted Functional Partners:
rbsC
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family
 
  
 0.970
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
  
 0.964
rbsB
annotation not available
 
 
 0.954
rbsA
annotation not available
 
  
 0.952
fruI
Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family
   
 
 0.865
DR97_1193
annotation not available
   
  
 0.859
NagF
Putative phosphoenolpyruvate-protein phosphotransferase; PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase
   
 
 0.831
DR97_532
Deor family transcriptional regulator, glycerol-3-phosphate regulon repressor; Transcriptional regulator; deoR C terminal sensor domain protein
  
 
 
 0.737
argR
Arac family transcriptional regulator, l-arginine-responsive activator; ArgR could be a transcriptional activator of the dauBAR operon in response to the presence of L-Arg
  
   
 0.722
YbdL
annotation not available
    
 
 0.716
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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