STRINGSTRING
opmL protein (Pseudomonas aeruginosa) - STRING interaction network
"opmL" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opmLannotation not available (425 aa)    
Predicted Functional Partners:
DR97_5971
Uncharacterized protein; type_I_sec_LssB- type I secretion system ATPase family protein (723 aa)
 
   
  0.993
DR97_5970
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (395 aa)
 
 
  0.992
DR97_5973
annotation not available (1825 aa)
 
     
  0.942
DR97_589
annotation not available (237 aa)
 
          0.749
lapD
annotation not available (650 aa)
 
 
      0.668
DR97_5466
RND_mfp- efflux transporter, RND family, MFP subunit (505 aa)
   
 
  0.652
macB
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides (663 aa)
   
 
  0.620
mchF
annotation not available (343 aa)
   
   
  0.611
aprE
Alkaline protease secretion protein AprE; type_I_hlyD- type I secretion membrane fusion , HlyD family protein (432 aa)
 
 
  0.610
prtE
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (443 aa)
 
 
  0.596
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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