STRINGSTRING
pvdS protein (Pseudomonas aeruginosa) - STRING interaction network
"pvdS" - Uncharacterized protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pvdSUncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (187 aa)    
Predicted Functional Partners:
pvdL
Uncharacterized protein; D-ala-DACP-lig- D-alanine--poly(phosphoribitol) ligase, subunit 1 (4342 aa)
 
   
  0.955
mucA
Sigma factor AlgU negative regulatory protein; Anti sigma-E RseA, N-terminal domain protein (194 aa)
   
 
  0.937
fecR
annotation not available (317 aa)
 
 
  0.934
pchR
annotation not available (296 aa)
     
   
  0.925
DR97_493
annotation not available (327 aa)
 
 
  0.916
fiuR
annotation not available (323 aa)
 
 
  0.913
DR97_6048
annotation not available (107 aa)
   
   
  0.913
DR97_5935
annotation not available (316 aa)
 
 
  0.912
eta
annotation not available (638 aa)
     
   
  0.910
DR97_5707
annotation not available (328 aa)
 
 
  0.902
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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