STRINGSTRING
pvdL protein (Pseudomonas aeruginosa) - STRING interaction network
"pvdL" - Uncharacterized protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pvdLUncharacterized protein; D-ala-DACP-lig- D-alanine--poly(phosphoribitol) ligase, subunit 1 (4342 aa)    
Predicted Functional Partners:
pvdG
annotation not available (254 aa)
 
   
  0.978
DR97_6021
annotation not available (72 aa)
 
 
  0.959
pvdS
Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (187 aa)
 
   
  0.955
pvdO
annotation not available (284 aa)
   
   
  0.940
pvdQ
annotation not available (762 aa)
 
   
  0.931
rhbA
Diaminobutyrate-2-oxoglutarateaminotransferase; Dat- 2,4-diaminobutyrate 4-transaminase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (469 aa)
   
  0.918
pvdA
annotation not available (443 aa)
 
   
  0.914
DR97_6022
annotation not available (254 aa)
 
   
  0.913
rifR
annotation not available (251 aa)
 
   
  0.860
pvdN
annotation not available (427 aa)
   
   
  0.825
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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