Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_5206 | DR97_6040 | DR97_5206 | DR97_6040 | Hypothetical protein; DUF3509 domain-containing protein | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | 0.644 |
DR97_5206 | pvdN | DR97_5206 | DR97_6038 | Hypothetical protein; DUF3509 domain-containing protein | annotation not available | 0.506 |
DR97_6039 | DR97_6040 | DR97_6039 | DR97_6040 | annotation not available | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | 0.893 |
DR97_6039 | algE | DR97_6039 | DR97_4398 | annotation not available | Alginate production outer membrane protein; Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore | 0.402 |
DR97_6039 | algL | DR97_6039 | DR97_4395 | annotation not available | Poly(beta-d-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism May serve to degrade mislocalized alginate that is trapped in the periplasmic space. Acts preferentially on non-acetylated alginate or its precursor mannuronan. Is able to catalyze cleavage adjacent to either mannuronate or guluronate residues in alginate. Exhaustive digestion of alginate by AlgL generates dimeric and trimeric products . In addition to its enzymatic function, AlgL appears to be required [...] | 0.427 |
DR97_6039 | pvdL | DR97_6039 | DR97_6009 | annotation not available | Uncharacterized protein; D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1 | 0.549 |
DR97_6039 | pvdN | DR97_6039 | DR97_6038 | annotation not available | annotation not available | 0.982 |
DR97_6039 | pvdO | DR97_6039 | DR97_6037 | annotation not available | annotation not available | 0.948 |
DR97_6040 | DR97_5206 | DR97_6040 | DR97_5206 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | Hypothetical protein; DUF3509 domain-containing protein | 0.644 |
DR97_6040 | DR97_6039 | DR97_6040 | DR97_6039 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | annotation not available | 0.893 |
DR97_6040 | algE | DR97_6040 | DR97_4398 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | Alginate production outer membrane protein; Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore | 0.693 |
DR97_6040 | algF | DR97_6040 | DR97_4392 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | Alginate o-acetyl transferase algf family protein; Together with AlgI and AlgJ, forms an inner membrane complex which probably interacts with the alginate polymerization-transport complex and adds acetyl groups at the O-2 and O-3 positions of mannuronate residues. Acetylation of alginate is important for the architecture of biofilms and increases resistance to opsonic killing in the host | 0.657 |
DR97_6040 | algG | DR97_6040 | DR97_4397 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | Poly(beta-d-mannuronate) c5 epimerase; Catalyzes the epimerization of beta-D-mannuronate to alpha-L- guluronate during the synthesis of the linear polysaccharide alginate . In addition, is part of a periplasmic protein complex that protects alginate from degradation by AlgL by channeling the newly formed alginate polymer through a scaffold that transfers the alginate polymer through the periplasmic space to the outer membrane secretin AlgE | 0.697 |
DR97_6040 | algK | DR97_6040 | DR97_4399 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | Alginate biosynthesis protein algk; May be involved in the polymerization of mannuronate to alginate | 0.699 |
DR97_6040 | algL | DR97_6040 | DR97_4395 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | Poly(beta-d-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism May serve to degrade mislocalized alginate that is trapped in the periplasmic space. Acts preferentially on non-acetylated alginate or its precursor mannuronan. Is able to catalyze cleavage adjacent to either mannuronate or guluronate residues in alginate. Exhaustive digestion of alginate by AlgL generates dimeric and trimeric products . In addition to its enzymatic function, AlgL appears to be required [...] | 0.677 |
DR97_6040 | pvdL | DR97_6040 | DR97_6009 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | Uncharacterized protein; D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1 | 0.774 |
DR97_6040 | pvdN | DR97_6040 | DR97_6038 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | annotation not available | 0.905 |
DR97_6040 | pvdO | DR97_6040 | DR97_6037 | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | annotation not available | 0.872 |
algE | DR97_6039 | DR97_4398 | DR97_6039 | Alginate production outer membrane protein; Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore | annotation not available | 0.402 |
algE | DR97_6040 | DR97_4398 | DR97_6040 | Alginate production outer membrane protein; Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore | PvdD/PvdJ; TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein | 0.693 |
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