STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_6070IV_VI_DotU: type IV/VI secretion system , DotU family domain protein (252 aa)    
Predicted Functional Partners:
DR97_6071
Type vi secretion system protein impl; imcF-related N-terminal domain protein
 
 
 0.980
DR97_6072
Type vi secretion system protein impa; impA-related N-terminal family protein
 
  
 0.980
DR97_6069
Type vi secretion system protein impj; Uncharacterized protein
 
  
 0.973
DR97_6068
annotation not available
 
     0.927
DR97_6064
annotation not available
 
  
 0.867
DR97_6065
Type vi secretion system secreted protein hcp; Uncharacterized protein
 
   
 0.864
DR97_6062
Type vi secretion system protein imph; Uncharacterized protein
 
  
 0.852
DR97_6063
Type VI secretion system protein ImpG
 
  
 0.847
DR97_6057
Hypothetical protein; Uncharacterized protein
 
    0.820
DR97_6058
annotation not available
 
     0.820
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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