tauB3 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tauB3

annotation not available (282 aa)

Predicted Functional Partners:

DR97_6123

0.995

DR97_6125

0.992

DR97_6122

0.972

tauD_1

0.808

tfdA

0.800

DR97_5796

0.787

DR97_5795

0.781

sfnG

0.768

DR97_5433

0.766

DR97_6108

0.762

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_5433	DR97_5795	DR97_5433	DR97_5795	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	annotation not available	0.548
DR97_5433	DR97_5796	DR97_5433	DR97_5796	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.549
DR97_5433	DR97_6108	DR97_5433	DR97_6108	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	Putative flavin reductase dependent enzyme; acyl-CoA dehydrogenase, N-terminal domain protein	0.671
DR97_5433	DR97_6122	DR97_5433	DR97_6122	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	annotation not available	0.668
DR97_5433	DR97_6123	DR97_5433	DR97_6123	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	annotation not available	0.676
DR97_5433	DR97_6125	DR97_5433	DR97_6125	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	annotation not available	0.792
DR97_5433	sfnG	DR97_5433	DR97_3912	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	LLM_DMSO2_sfnG- dimethyl sulfone monooxygenase SfnG	0.755
DR97_5433	tauB3	DR97_5433	DR97_6124	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	annotation not available	0.766
DR97_5433	tauD_1	DR97_5433	DR97_3149	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	annotation not available	0.653
DR97_5433	tfdA	DR97_5433	DR97_3150	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	annotation not available	0.580
DR97_5795	DR97_5433	DR97_5795	DR97_5433	annotation not available	Putative periplasmic aliphatic sulfonate-binding protein; ssuA_fam- ABC transporter, substrate-binding , aliphatic sulfonates family protein	0.548
DR97_5795	DR97_5796	DR97_5795	DR97_5796	annotation not available	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.993
DR97_5795	DR97_6108	DR97_5795	DR97_6108	annotation not available	Putative flavin reductase dependent enzyme; acyl-CoA dehydrogenase, N-terminal domain protein	0.750
DR97_5795	DR97_6122	DR97_5795	DR97_6122	annotation not available	annotation not available	0.750
DR97_5795	DR97_6123	DR97_5795	DR97_6123	annotation not available	annotation not available	0.804
DR97_5795	DR97_6125	DR97_5795	DR97_6125	annotation not available	annotation not available	0.784
DR97_5795	sfnG	DR97_5795	DR97_3912	annotation not available	LLM_DMSO2_sfnG- dimethyl sulfone monooxygenase SfnG	0.750
DR97_5795	tauB3	DR97_5795	DR97_6124	annotation not available	annotation not available	0.781
DR97_5795	tauD_1	DR97_5795	DR97_3149	annotation not available	annotation not available	0.750
DR97_5795	tfdA	DR97_5795	DR97_3150	annotation not available	annotation not available	0.750

page 1 of 6

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About