STRINGSTRING
rhmT protein (Pseudomonas aeruginosa) - STRING interaction network
"rhmT" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhmTannotation not available (440 aa)    
Predicted Functional Partners:
rhmD
L-rhamnonate dehydratase; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein (391 aa)
 
 
  0.859
DR97_6214
annotation not available (331 aa)
   
        0.714
aldH3
annotation not available (527 aa)
 
        0.611
DR97_6220
annotation not available (441 aa)
 
     
0.537
DR97_6217
annotation not available (416 aa)
   
   
  0.525
DR97_6219
annotation not available (319 aa)
 
        0.519
pcaK3
annotation not available (448 aa)
   
 
  0.481
mmlH
annotation not available (423 aa)
   
 
 
  0.446
vanK
annotation not available (444 aa)
   
 
 
  0.440
benK
annotation not available (446 aa)
   
          0.440
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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