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ku protein (Pseudomonas aeruginosa) - STRING interaction network
"ku" - Non-homologous end joining protein Ku in Pseudomonas aeruginosa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
kuNon-homologous end joining protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (293 aa)    
Predicted Functional Partners:
ligD
ATP-dependent DNA ligase; ligD_pol- DNA polymerase LigD, polymerase domain (292 aa)
 
   
  0.982
DR97_3317
Phosphoesterase; yfcE- phosphodiesterase, MJ0936 family protein (150 aa)
   
     
  0.903
DR97_6278
annotation not available (163 aa)
 
          0.812
DR97_6277
Uncharacterized protein (80 aa)
   
        0.806
sbcC
Nuclease sbcCD subunit C; recF/RecN/SMC N terminal domain protein (1211 aa)
           
  0.769
DR97_6279
Mg(2+) transporter (44 aa)
              0.765
yhxC
annotation not available (286 aa)
 
        0.744
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily (794 aa)
           
  0.733
DR97_6255
annotation not available (156 aa)
 
        0.729
DR97_6269
Uncharacterized protein (312 aa)
 
          0.679
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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