bkdR protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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[Homology]

Score

bkdR

annotation not available (153 aa)

Predicted Functional Partners:

DR97_6305

0.625

tyrR1

0.554

prpR

0.551

bkdA1

0.442

lvr

0.434

phhB

0.427

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_6305	bkdR	DR97_6305	DR97_6304	Uncharacterized protein	annotation not available	0.625
bkdA1	bkdR	DR97_6303	DR97_6304	annotation not available	annotation not available	0.442
bkdR	DR97_6305	DR97_6304	DR97_6305	annotation not available	Uncharacterized protein	0.625
bkdR	bkdA1	DR97_6304	DR97_6303	annotation not available	annotation not available	0.442
bkdR	lvr	DR97_6304	DR97_5657	annotation not available	annotation not available	0.434
bkdR	phhB	DR97_6304	DR97_1072	annotation not available	annotation not available	0.427
bkdR	prpR	DR97_6304	DR97_6209	annotation not available	propionate_PrpR- propionate catabolism operon regulatory protein PrpR	0.551
bkdR	tyrR1	DR97_6304	DR97_1070	annotation not available	annotation not available	0.554
lvr	bkdR	DR97_5657	DR97_6304	annotation not available	annotation not available	0.434
phhB	bkdR	DR97_1072	DR97_6304	annotation not available	annotation not available	0.427
phhB	tyrR1	DR97_1072	DR97_1070	annotation not available	annotation not available	0.863
prpR	bkdR	DR97_6209	DR97_6304	propionate_PrpR- propionate catabolism operon regulatory protein PrpR	annotation not available	0.551
tyrR1	bkdR	DR97_1070	DR97_6304	annotation not available	annotation not available	0.554
tyrR1	phhB	DR97_1070	DR97_1072	annotation not available	annotation not available	0.863

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