Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1570 | DR97_65 | DR97_1570 | DR97_65 | annotation not available | annotation not available | 0.577 |
DR97_1570 | YafE | DR97_1570 | DR97_4814 | annotation not available | annotation not available | 0.577 |
DR97_1655 | DR97_2629 | DR97_1655 | DR97_2629 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.498 |
DR97_1655 | DR97_65 | DR97_1655 | DR97_65 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.570 |
DR97_1655 | bamE | DR97_1655 | DR97_2109 | Hypothetical protein; Uncharacterized protein | Outer membrane protein assembly factor bame; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (By similarity). May have a structural role in maintaining the cell envelope integrity | 0.537 |
DR97_2629 | DR97_1655 | DR97_2629 | DR97_1655 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.498 |
DR97_2629 | DR97_65 | DR97_2629 | DR97_65 | annotation not available | annotation not available | 0.550 |
DR97_65 | DR97_1570 | DR97_65 | DR97_1570 | annotation not available | annotation not available | 0.577 |
DR97_65 | DR97_1655 | DR97_65 | DR97_1655 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.570 |
DR97_65 | DR97_2629 | DR97_65 | DR97_2629 | annotation not available | annotation not available | 0.550 |
DR97_65 | YafE | DR97_65 | DR97_4814 | annotation not available | annotation not available | 0.527 |
DR97_65 | bamE | DR97_65 | DR97_2109 | annotation not available | Outer membrane protein assembly factor bame; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (By similarity). May have a structural role in maintaining the cell envelope integrity | 0.570 |
DR97_65 | dnaQ | DR97_65 | DR97_63 | annotation not available | DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease | 0.845 |
DR97_65 | gloB | DR97_65 | DR97_66 | annotation not available | Putative hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid | 0.809 |
DR97_65 | nuoD | DR97_65 | DR97_5323 | annotation not available | Bifunctional nadh:ubiquinone oxidoreductase subunit c/d; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient | 0.988 |
DR97_65 | rnhA | DR97_65 | DR97_64 | annotation not available | Rnase h family protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids | 0.901 |
DR97_65 | safA | DR97_65 | DR97_67 | annotation not available | Membrane-bound lytic murein transglycosylase D; spore_safA: spore coat assembly SafA domain protein | 0.768 |
YafE | DR97_1570 | DR97_4814 | DR97_1570 | annotation not available | annotation not available | 0.577 |
YafE | DR97_65 | DR97_4814 | DR97_65 | annotation not available | annotation not available | 0.527 |
YafE | nuoD | DR97_4814 | DR97_5323 | annotation not available | Bifunctional nadh:ubiquinone oxidoreductase subunit c/d; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient | 0.988 |
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