DR97_65 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

DR97_65

annotation not available (253 aa)

Predicted Functional Partners:

rnhA

0.896

dnaQ

0.853

safA

0.802

gloB

0.791

DR97_1655

0.567

bamE

0.564

DR97_2606

0.528

mucB

0.526

hemX

0.524

DR97_936

0.493

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1655	DR97_65	DR97_1655	DR97_65	Uncharacterized protein	annotation not available	0.567
DR97_1655	DR97_936	DR97_1655	DR97_936	Uncharacterized protein	annotation not available	0.672
DR97_1655	bamE	DR97_1655	DR97_2109	Uncharacterized protein	Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	0.474
DR97_1655	hemX	DR97_1655	DR97_2629	Uncharacterized protein	annotation not available	0.498
DR97_1655	mucB	DR97_1655	DR97_1219	Uncharacterized protein	annotation not available	0.410
DR97_2606	DR97_65	DR97_2606	DR97_65	annotation not available	annotation not available	0.528
DR97_65	DR97_1655	DR97_65	DR97_1655	annotation not available	Uncharacterized protein	0.567
DR97_65	DR97_2606	DR97_65	DR97_2606	annotation not available	annotation not available	0.528
DR97_65	DR97_936	DR97_65	DR97_936	annotation not available	annotation not available	0.493
DR97_65	bamE	DR97_65	DR97_2109	annotation not available	Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	0.564
DR97_65	dnaQ	DR97_65	DR97_63	annotation not available	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3’-5’ exonuclease	0.853
DR97_65	gloB	DR97_65	DR97_66	annotation not available	Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid	0.791
DR97_65	hemX	DR97_65	DR97_2629	annotation not available	annotation not available	0.524
DR97_65	mucB	DR97_65	DR97_1219	annotation not available	annotation not available	0.526
DR97_65	rnhA	DR97_65	DR97_64	annotation not available	annotation not available	0.896
DR97_65	safA	DR97_65	DR97_67	annotation not available	Membrane-bound lytic murein transglycosylase D; spore_safA- spore coat assembly SafA domain protein	0.802
DR97_936	DR97_1655	DR97_936	DR97_1655	annotation not available	Uncharacterized protein	0.672
DR97_936	DR97_65	DR97_936	DR97_65	annotation not available	annotation not available	0.493
DR97_936	bamE	DR97_936	DR97_2109	annotation not available	Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	0.737
bamE	DR97_1655	DR97_2109	DR97_1655	Outer membrane protein assembly factor BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane	Uncharacterized protein	0.474

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