Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CobC | btuB | DR97_655 | DR97_664 | annotation not available | tonB-B12: TonB-dependent vitamin B12 receptor | 0.770 |
CobC | cobB | DR97_655 | DR97_662 | annotation not available | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source | 0.930 |
CobC | cobO | DR97_655 | DR97_663 | annotation not available | Cob(i)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids (By similarity) | 0.880 |
CobC | cobS | DR97_655 | DR97_653 | annotation not available | Adenosylcobinamide-gdp ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate | 0.997 |
DR97_3822 | btuB | DR97_3822 | DR97_664 | annotation not available | tonB-B12: TonB-dependent vitamin B12 receptor | 0.776 |
DR97_3822 | cobB | DR97_3822 | DR97_662 | annotation not available | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source | 0.406 |
DR97_3822 | cobO | DR97_3822 | DR97_663 | annotation not available | Cob(i)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids (By similarity) | 0.612 |
DR97_3822 | cobS | DR97_3822 | DR97_653 | annotation not available | Adenosylcobinamide-gdp ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate | 0.441 |
ExbD | btuB | DR97_4957 | DR97_664 | annotation not available | tonB-B12: TonB-dependent vitamin B12 receptor | 0.888 |
ExbD | tolB | DR97_4957 | DR97_965 | annotation not available | Tol-pal system beta propeller repeat protein tolb; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.525 |
ExbD | tonB | DR97_4957 | DR97_2910 | annotation not available | Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity) | 0.938 |
btuB | CobC | DR97_664 | DR97_655 | tonB-B12: TonB-dependent vitamin B12 receptor | annotation not available | 0.770 |
btuB | DR97_3822 | DR97_664 | DR97_3822 | tonB-B12: TonB-dependent vitamin B12 receptor | annotation not available | 0.776 |
btuB | ExbD | DR97_664 | DR97_4957 | tonB-B12: TonB-dependent vitamin B12 receptor | annotation not available | 0.888 |
btuB | cobB | DR97_664 | DR97_662 | tonB-B12: TonB-dependent vitamin B12 receptor | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source | 0.788 |
btuB | cobO | DR97_664 | DR97_663 | tonB-B12: TonB-dependent vitamin B12 receptor | Cob(i)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids (By similarity) | 0.933 |
btuB | cobS | DR97_664 | DR97_653 | tonB-B12: TonB-dependent vitamin B12 receptor | Adenosylcobinamide-gdp ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate | 0.766 |
btuB | exbD | DR97_664 | DR97_3156 | tonB-B12: TonB-dependent vitamin B12 receptor | Biopolymer transport exbd/tolr family protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates | 0.871 |
btuB | lptD | DR97_664 | DR97_3564 | tonB-B12: TonB-dependent vitamin B12 receptor | Organic solvent tolerance family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane | 0.785 |
btuB | tolB | DR97_664 | DR97_965 | tonB-B12: TonB-dependent vitamin B12 receptor | Tol-pal system beta propeller repeat protein tolb; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity | 0.862 |
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