Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ActP | YeaM | DR97_4701 | DR97_705 | Transporter, solute:sodium symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family | annotation not available | 0.682 |
ActP | YfjD | DR97_4701 | DR97_4128 | Transporter, solute:sodium symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family | annotation not available | 0.856 |
ActP | braF | DR97_4701 | DR97_872 | Transporter, solute:sodium symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family | Branched-chain amino acid transport system atp-binding protein; Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids | 0.854 |
DR97_3269 | YeaM | DR97_3269 | DR97_705 | annotation not available | annotation not available | 0.571 |
DR97_3269 | cdhR | DR97_3269 | DR97_2766 | annotation not available | Helix-turn-helix domain protein; Induces the transcription of the PA5384-PA5388 operon in response to carnitine. This operon is involved in the degradation of L- carnitine, and allows P.aeruginosa to grow on L-carnitine as the sole source of carbon and nitrogen | 0.521 |
DR97_3269 | mmsR | DR97_3269 | DR97_4368 | annotation not available | Transcriptional regulator; Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes | 0.810 |
DR97_701 | DR97_702 | DR97_701 | DR97_702 | Conserved hypothetical protein | annotation not available | 0.845 |
DR97_701 | DR97_703 | DR97_701 | DR97_703 | Conserved hypothetical protein | Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | 0.845 |
DR97_701 | DR97_704 | DR97_701 | DR97_704 | Conserved hypothetical protein | Hypothetical protein; Putative membrane protein | 0.831 |
DR97_701 | YeaM | DR97_701 | DR97_705 | Conserved hypothetical protein | annotation not available | 0.565 |
DR97_702 | DR97_701 | DR97_702 | DR97_701 | annotation not available | Conserved hypothetical protein | 0.845 |
DR97_702 | DR97_703 | DR97_702 | DR97_703 | annotation not available | Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | 0.969 |
DR97_702 | DR97_704 | DR97_702 | DR97_704 | annotation not available | Hypothetical protein; Putative membrane protein | 0.831 |
DR97_702 | YeaM | DR97_702 | DR97_705 | annotation not available | annotation not available | 0.638 |
DR97_703 | DR97_701 | DR97_703 | DR97_701 | Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | Conserved hypothetical protein | 0.845 |
DR97_703 | DR97_702 | DR97_703 | DR97_702 | Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | annotation not available | 0.969 |
DR97_703 | DR97_704 | DR97_703 | DR97_704 | Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | Hypothetical protein; Putative membrane protein | 0.831 |
DR97_703 | YeaM | DR97_703 | DR97_705 | Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | annotation not available | 0.635 |
DR97_704 | DR97_701 | DR97_704 | DR97_701 | Hypothetical protein; Putative membrane protein | Conserved hypothetical protein | 0.831 |
DR97_704 | DR97_702 | DR97_704 | DR97_702 | Hypothetical protein; Putative membrane protein | annotation not available | 0.831 |
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