Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_399 | DR97_726 | DR97_399 | DR97_726 | Belongs to the short-chain dehydrogenases/reductases (SDR) family | annotation not available | 0.685 |
DR97_6014 | DR97_726 | DR97_6014 | DR97_726 | annotation not available | annotation not available | 0.849 |
DR97_6195 | DR97_726 | DR97_6195 | DR97_726 | annotation not available | annotation not available | 0.567 |
DR97_726 | DR97_399 | DR97_726 | DR97_399 | annotation not available | Belongs to the short-chain dehydrogenases/reductases (SDR) family | 0.685 |
DR97_726 | DR97_6014 | DR97_726 | DR97_6014 | annotation not available | annotation not available | 0.849 |
DR97_726 | DR97_6195 | DR97_726 | DR97_6195 | annotation not available | annotation not available | 0.567 |
DR97_726 | DR97_728 | DR97_726 | DR97_728 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.495 |
DR97_726 | PncA | DR97_726 | DR97_2269 | annotation not available | annotation not available | 0.871 |
DR97_726 | gidB | DR97_726 | DR97_2943 | annotation not available | 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA | 0.498 |
DR97_726 | gyrA | DR97_726 | DR97_4768 | annotation not available | Dna gyrase, a subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner | 0.490 |
DR97_726 | kefB | DR97_726 | DR97_727 | annotation not available | Transporter, monovalent cation:proton antiporter-2 family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family | 0.538 |
DR97_726 | rpoB | DR97_726 | DR97_3641 | annotation not available | Dna-directed rna polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.498 |
DR97_726 | rpsL | DR97_726 | DR97_3643 | annotation not available | Small subunit ribosomal protein s12; With S4 and S5 plays an important role in translational accuracy | 0.686 |
DR97_728 | DR97_726 | DR97_728 | DR97_726 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.495 |
DR97_728 | kefB | DR97_728 | DR97_727 | Hypothetical protein; Uncharacterized protein | Transporter, monovalent cation:proton antiporter-2 family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family | 0.848 |
PncA | DR97_726 | DR97_2269 | DR97_726 | annotation not available | annotation not available | 0.871 |
PncA | gidB | DR97_2269 | DR97_2943 | annotation not available | 16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA | 0.894 |
PncA | gyrA | DR97_2269 | DR97_4768 | annotation not available | Dna gyrase, a subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner | 0.758 |
PncA | rpoB | DR97_2269 | DR97_3641 | annotation not available | Dna-directed rna polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.890 |
PncA | rpsL | DR97_2269 | DR97_3643 | annotation not available | Small subunit ribosomal protein s12; With S4 and S5 plays an important role in translational accuracy | 0.765 |
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