DR97_739 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_739

annotation not available (254 aa)

Predicted Functional Partners:

ydgI

0.688

DR97_738

0.515

cobB2

0.508

DR97_6164

0.473

glpD_2

0.433

rimJ

0.432

DR97_4992

0.424

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_4992	DR97_739	DR97_4992	DR97_739	annotation not available	annotation not available	0.424
DR97_4992	rimJ	DR97_4992	DR97_5917	annotation not available	annotation not available	0.447
DR97_6164	DR97_739	DR97_6164	DR97_739	annotation not available	annotation not available	0.473
DR97_738	DR97_739	DR97_738	DR97_739	annotation not available	annotation not available	0.515
DR97_738	cobB2	DR97_738	DR97_737	annotation not available	annotation not available	0.883
DR97_739	DR97_4992	DR97_739	DR97_4992	annotation not available	annotation not available	0.424
DR97_739	DR97_6164	DR97_739	DR97_6164	annotation not available	annotation not available	0.473
DR97_739	DR97_738	DR97_739	DR97_738	annotation not available	annotation not available	0.515
DR97_739	cobB2	DR97_739	DR97_737	annotation not available	annotation not available	0.508
DR97_739	glpD_2	DR97_739	DR97_4912	annotation not available	annotation not available	0.433
DR97_739	rimJ	DR97_739	DR97_5917	annotation not available	annotation not available	0.432
DR97_739	ydgI	DR97_739	DR97_740	annotation not available	annotation not available	0.688
cobB2	DR97_738	DR97_737	DR97_738	annotation not available	annotation not available	0.883
cobB2	DR97_739	DR97_737	DR97_739	annotation not available	annotation not available	0.508
glpD_2	DR97_739	DR97_4912	DR97_739	annotation not available	annotation not available	0.433
rimJ	DR97_4992	DR97_5917	DR97_4992	annotation not available	annotation not available	0.447
rimJ	DR97_739	DR97_5917	DR97_739	annotation not available	annotation not available	0.432
ydgI	DR97_739	DR97_740	DR97_739	annotation not available	annotation not available	0.688

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

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