STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0115_0090SF3b1 domain-containing protein. (759 aa)    
Predicted Functional Partners:
Esi_0018_0017
Proline-rich spliceosome-associated (PSP) family protein.
   
 0.982
Esi_0042_0051
RRM domain-containing protein.
   
 0.981
Esi_0058_0037
Spliceosomal protein sap, putative.
   
 0.981
Esi_0323_0006
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.980
Rds3
U2 snRNP protein Rds3p.
   
 0.980
Esi_0078_0045
Uncharacterized protein.
    
 0.980
Esi_0024_0135
DEAD box helicase.
   
 0.977
SmF
Small nuclear ribonucleoprotein SmF.
   
 0.976
Esi_0046_0003
DEAD box helicase; Belongs to the DEAD box helicase family.
   
 0.974
SmE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.974
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.