STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0180_0042Methyltransferase type 11. (421 aa)    
Predicted Functional Partners:
CAS
Cycloartenol synthase.
    
 0.658
CAS-2
Cycloartenol synthase.
    
 0.658
Esi_0302_0001
Uncharacterized protein.
   
  0.640
rps17
30S ribosomal protein S17, chloroplastic; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.634
Esi_0055_0027
Bms1-type G domain-containing protein.
   
  0.629
Esi_0013_0133
Putative decarboxylase family protein, lysine decarboxylase.
   
  0.629
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
   
  0.628
Esi_0114_0059
KH domain-containing protein.
   
  0.626
Esi_0002_0192
Uncharacterized protein.
   
  0.617
Esi_0108_0022
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
 
  
  0.615
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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