STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0229_0023UBX domain-containing protein. (609 aa)    
Predicted Functional Partners:
Esi_0018_0041
Uncharacterized protein.
    
 0.999
Esi_0246_0005
UBX domain-containing protein.
    
 0.999
Esi_0014_0173
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
    
  0.999
Esi_0152_0032
Putative ubiquitin fusion-degradation protein.
    
 0.999
Esi_0041_0124
Uncharacterized protein.
    
 0.999
Esi_0070_0117
NPL4 domain-containing protein.
    
 0.999
Esi_0009_0093
Uncharacterized protein.
    
 0.999
Esi_0180_0032
RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C; Belongs to the SKP1 family.
   
 0.998
Esi_0302_0019
Similar to ubiquitin.
    
 0.995
Esi_0010_0201
Uncharacterized protein.
    
 0.995
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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