Esi_0290_0007 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0290_0007

Uncharacterized protein. (451 aa)

Predicted Functional Partners:

Esi_0184_0026

0.539

rpl36

0.462

rpl2

0.433

rpl20

0.430

Esi_0047_0056

0.430

rps13

0.423

Esi_0174_0006

0.423

rpl13

0.418

Esi_0076_0090

0.418

Esi_0092_0010

0.417

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0047_0056	Esi_0076_0090	D7G284	D8LST0	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Uncharacterized protein.	0.971
Esi_0047_0056	Esi_0092_0010	D7G284	D7G8U3	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ribosomal_L2_C domain-containing protein.	0.979
Esi_0047_0056	Esi_0174_0006	D7G284	D8LGL2	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Uncharacterized protein.	0.978
Esi_0047_0056	Esi_0184_0026	D7G284	D7FP15	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.990
Esi_0047_0056	Esi_0290_0007	D7G284	D7FVG4	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Uncharacterized protein.	0.430
Esi_0047_0056	rpl13	D7G284	D1J730	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	50S ribosomal protein L13, chloroplastic; Belongs to the universal ribosomal protein uL13 family.	0.971
Esi_0047_0056	rpl2	D7G284	D1J749	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.986
Esi_0047_0056	rpl36	D7G284	D1J734	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	50S ribosomal protein L36, chloroplastic.	0.990
Esi_0047_0056	rps13	D7G284	D1J733	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	30S ribosomal protein S13, chloroplastic; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA.	0.978
Esi_0076_0090	Esi_0047_0056	D8LST0	D7G284	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.971
Esi_0076_0090	Esi_0092_0010	D8LST0	D7G8U3	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.968
Esi_0076_0090	Esi_0174_0006	D8LST0	D8LGL2	Uncharacterized protein.	Uncharacterized protein.	0.972
Esi_0076_0090	Esi_0184_0026	D8LST0	D7FP15	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.994
Esi_0076_0090	Esi_0290_0007	D8LST0	D7FVG4	Uncharacterized protein.	Uncharacterized protein.	0.418
Esi_0076_0090	rpl2	D8LST0	D1J749	Uncharacterized protein.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.988
Esi_0076_0090	rpl20	D8LST0	D1J766	Uncharacterized protein.	50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.971
Esi_0076_0090	rpl36	D8LST0	D1J734	Uncharacterized protein.	50S ribosomal protein L36, chloroplastic.	0.989
Esi_0076_0090	rps13	D8LST0	D1J733	Uncharacterized protein.	30S ribosomal protein S13, chloroplastic; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA.	0.972
Esi_0092_0010	Esi_0047_0056	D7G8U3	D7G284	Ribosomal_L2_C domain-containing protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.979
Esi_0092_0010	Esi_0076_0090	D7G8U3	D8LST0	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.968