Esi_0294_0009 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0294_0009

CHHC U11-48K-type domain-containing protein. (614 aa)

Predicted Functional Partners:

Esi_0334_0018

0.555

Esi_0094_0071

0.553

Esi_0078_0058

0.553

Esi_0079_0075

0.546

Esi_0212_0009

0.505

Esi_0065_0074

0.505

Esi_0006_0085

0.505

Ngp1

0.471

Esi_0014_0012

0.463

Esi_0002_0003

0.449

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0002_0003	Esi_0014_0012	D7FPV8	D8LES3	tRNA (Guanine-N(7)-)-methyltransferase.	RNA helicase.	0.545
Esi_0002_0003	Esi_0078_0058	D7FPV8	D8LT48	tRNA (Guanine-N(7)-)-methyltransferase.	ANK_REP_REGION domain-containing protein.	0.555
Esi_0002_0003	Esi_0079_0075	D7FPV8	D7G6P6	tRNA (Guanine-N(7)-)-methyltransferase.	Uncharacterized protein.	0.715
Esi_0002_0003	Esi_0094_0071	D7FPV8	D7G924	tRNA (Guanine-N(7)-)-methyltransferase.	UPF0020 domain-containing protein.	0.555
Esi_0002_0003	Esi_0212_0009	D7FPV8	D7FR97	tRNA (Guanine-N(7)-)-methyltransferase.	Uncharacterized protein.	0.481
Esi_0002_0003	Esi_0294_0009	D7FPV8	D7FVJ5	tRNA (Guanine-N(7)-)-methyltransferase.	CHHC U11-48K-type domain-containing protein.	0.449
Esi_0002_0003	Esi_0334_0018	D7FPV8	D7FXW8	tRNA (Guanine-N(7)-)-methyltransferase.	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	0.589
Esi_0002_0003	Ngp1	D7FPV8	D8LTC1	tRNA (Guanine-N(7)-)-methyltransferase.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.477
Esi_0006_0085	Esi_0294_0009	D8LQF8	D7FVJ5	Uncharacterized protein.	CHHC U11-48K-type domain-containing protein.	0.505
Esi_0014_0012	Esi_0002_0003	D8LES3	D7FPV8	RNA helicase.	tRNA (Guanine-N(7)-)-methyltransferase.	0.545
Esi_0014_0012	Esi_0065_0074	D8LES3	D7G5I4	RNA helicase.	DEAD box helicase; Belongs to the DEAD box helicase family.	0.811
Esi_0014_0012	Esi_0079_0075	D8LES3	D7G6P6	RNA helicase.	Uncharacterized protein.	0.756
Esi_0014_0012	Esi_0212_0009	D8LES3	D7FR97	RNA helicase.	Uncharacterized protein.	0.892
Esi_0014_0012	Esi_0294_0009	D8LES3	D7FVJ5	RNA helicase.	CHHC U11-48K-type domain-containing protein.	0.463
Esi_0014_0012	Esi_0334_0018	D8LES3	D7FXW8	RNA helicase.	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	0.540
Esi_0014_0012	Ngp1	D8LES3	D8LTC1	RNA helicase.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.921
Esi_0065_0074	Esi_0014_0012	D7G5I4	D8LES3	DEAD box helicase; Belongs to the DEAD box helicase family.	RNA helicase.	0.811
Esi_0065_0074	Esi_0079_0075	D7G5I4	D7G6P6	DEAD box helicase; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.849
Esi_0065_0074	Esi_0212_0009	D7G5I4	D7FR97	DEAD box helicase; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.962
Esi_0065_0074	Esi_0294_0009	D7G5I4	D7FVJ5	DEAD box helicase; Belongs to the DEAD box helicase family.	CHHC U11-48K-type domain-containing protein.	0.505